metadata: viruses_fish_associated_curated: 2 rows where bioproject = "PRJNA717374" and tax_genus

2 rows where bioproject = "PRJNA717374" and tax_genus_NTorNR = "Kobuvirus"

descending

Link	rowid ▼	contig_withLCA_withcluster	clusterLCA_curated	Category	contig_withLCA	shortcontigname	clusterLCA	clusterLCAcurated_contigcount	clusterLCAcurated_bioprojectcount	clusterLCAcurated_clustercount	shortclustername	cluster	clustersize	bioprojectsbycluster	bioproject	node	length	coverage	rel_abundance	taxname_lca_NTorNR	taxid_lca_NTorNR	taxoncategory_NTorNR	taxoncategorysimple_NTorNR	bits_NTorNR	evalue_NTorNR	viruscategory_NTorNR	viruscategorysimple_NTorNR	analysis_used	contig_name	lowcoverage_flag	target_title_NTorNR	target_NTorNR	taxid_NTorNR	gene_NTorNR	allele_NTorNR	pident_NTorNR	sumperc_cov_NTorNR	alnlen_NTorNR	mismatch_NTorNR	qcov_NTorNR	gapopen_NTorNR	qstart_NTorNR	qend_NTorNR	tstart_NTorNR	tend_NTorNR	sumalnlen_NTorNR	maxbits_NTorNR	bits_percmax_NTorNR	tax_superkingdom_NTorNR	tax_clade_NTorNR	tax_kingdom_NTorNR	tax_phylum_NTorNR	tax_class_NTorNR	tax_order_NTorNR	tax_family_NTorNR	tax_genus_NTorNR	tax_species_NTorNR	classification	taxname_lca_NTclustered	taxname_lca_NR	target_NTclustered	taxoncategory_NTclustered	taxoncategory_NR	taxoncategorysimple_NTclustered	taxoncategorysimple_NR	bits_NTclustered	bits_NR	evalue_NTclustered	evalue_NR
8367	8367	PRJNA717374_CONTIG_2654\|Mink_kobuvirus\|CLUSTER1_Coleura_bat_picornavirus\|100\|37	Zebrafish jaw picornavirus	Novel	PRJNA717374_CONTIG_2654\|Mink_kobuvirus	PRJNA717374_CONTIG_2654	Coleura bat picornavirus	89	37	1	CLUSTER1_Coleura_bat_picornavirus\|100\|37	PRJNA670521_P_NODE_5_length_8668_cov_14.621640_g3_i0\|Kobuvirus\|NR\|2.54e-153\|NA	93	37	PRJNA717374	2654	405	3.638554	14.7361437	Mink kobuvirus	3242813	Viruses	Viruses	68.2	3.16e-10	Mink kobuvirus	Non-phage	NR	PRJNA717374_P_NODE_2654_length_405_cov_3.638554_g2519_i0		XEQ84337.1 polyprotein, partial [Mink kobuvirus]	XEQ84337.1	3242813	g2519	i0	32.9	1.081481481	146	85	98.5	3	405	7	310	455	438	68.2	1.0	Viruses	Riboviria	Orthornavirae	Pisuviricota	Pisoniviricetes	Picornavirales	Picornaviridae	Kobuvirus	Mink kobuvirus	Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Kobuvirus;Zebrafish jaw picornavirus		Mink kobuvirus			Viruses		Viruses		68.2		3.16e-10
8381	8381	PRJNA717374_CONTIG_7006\|Kobuvirus\|CLUSTER1_Coleura_bat_picornavirus\|100\|37	Zebrafish jaw picornavirus	Novel	PRJNA717374_CONTIG_7006\|Kobuvirus	PRJNA717374_CONTIG_7006	Coleura bat picornavirus	89	37	1	CLUSTER1_Coleura_bat_picornavirus\|100\|37	PRJNA670521_P_NODE_5_length_8668_cov_14.621640_g3_i0\|Kobuvirus\|NR\|2.54e-153\|NA	93	37	PRJNA717374	7006	271	3.525253	9.55343563	Kobuvirus	194960	Viruses	Viruses	92.0	1.62e-20	Kobuvirus	Non-phage	NR	PRJNA717374_P_NODE_7006_length_271_cov_3.525253_g6871_i0		QCI55838.1 3D polymerase, partial [Porcine kobuvirus]	QCI55838.1	1156769	g6871	i0	54.3	9.110701107	92	40	99.6	2	270	1	105	196	2469	92.0	1.0	Viruses	Riboviria	Orthornavirae	Pisuviricota	Pisoniviricetes	Picornavirales	Picornaviridae	Kobuvirus	Kobuvirus cebes	Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Kobuvirus;Zebrafish jaw picornavirus		Kobuvirus			Viruses		Viruses		92.0		1.62e-20

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;