RNAquarium Metadata Server
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viruses_fish_associated_curated

9 rows where bioproject = "PRJNA717374"

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tax_genus_NTorNR 2

tax_family_NTorNR 2

Category 2

bioproject 1

  • PRJNA717374 · 9 ✖
Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
1899 1899 PRJNA717374_CONTIG_3|Zebrafish_picornavirus_2|CLUSTER1_Zebrafish_picornavirus_2|1382|320 Danio blood picornavirus/Zebrafish picornavirus 2 Novel PRJNA717374_CONTIG_3|Zebrafish_picornavirus_2 PRJNA717374_CONTIG_3 Zebrafish picornavirus 2 1369 320 1 CLUSTER1_Zebrafish_picornavirus_2|1382|320 PRJNA924006_P_NODE_1_length_7278_cov_16.682998_g0_i0|Zebrafish_picornavirus_2|NR|0|NA 1370 320 PRJNA717374 3 5067 38.417101 1946.594508 Zebrafish picornavirus 2 3063761 Viruses Viruses 2887.0 0.0 Zebrafish picornavirus 2 Non-phage NTclustered PRJNA717374_P_NODE_3_length_5067_cov_38.417101_g2_i0   Zebrafish picornavirus 2 isolate AU/2020 polyprotein gene, complete cds gi|2551699335|gb|OK619588.1| 3063761 g2 i0 95.906 0.68383659 1783 68 68.0 5 8 1788 7108 5329 3465 2887.0 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Zebrafish picornavirus 2 Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Danio blood picornavirus/Zebrafish picornavirus 2 Zebrafish picornavirus 2 Zebrafish picornavirus 2 gi|2551699335|gb|OK619588.1| Viruses Viruses Viruses Viruses 2887.0 1979.0 0.0 0.0
2035 2035 PRJNA717374_CONTIG_59|Zebrafish_picornavirus_2|CLUSTER1_Zebrafish_picornavirus_2|1382|320 Danio blood picornavirus/Zebrafish picornavirus 2 Novel PRJNA717374_CONTIG_59|Zebrafish_picornavirus_2 PRJNA717374_CONTIG_59 Zebrafish picornavirus 2 1369 320 1 CLUSTER1_Zebrafish_picornavirus_2|1382|320 PRJNA924006_P_NODE_1_length_7278_cov_16.682998_g0_i0|Zebrafish_picornavirus_2|NR|0|NA 1370 320 PRJNA717374 59 2166 3.428571 74.26284786 Zebrafish picornavirus 2 3063761 Viruses Viruses 1123.0 0.0 Zebrafish picornavirus 2 Non-phage NTclustered PRJNA717374_P_NODE_59_length_2166_cov_3.428571_g41_i0   Zebrafish picornavirus 2 isolate AU/2020 polyprotein gene, complete cds gi|2551699335|gb|OK619588.1| 3063761 g41 i0 98.433 0.622345337 638 10 62.0 0 1407 2044 639 2 1348 1123.0 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Zebrafish picornavirus 2 Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Danio blood picornavirus/Zebrafish picornavirus 2 Zebrafish picornavirus 2 Wuhan sharpbelly picornavirus 1 gi|2551699335|gb|OK619588.1| Viruses Viruses Viruses Viruses 1123.0 722.0 0.0 2.56e-234
3219 3219 PRJNA717374_CONTIG_2|Cyprivirus_A|CLUSTER1_Cyprivirus_A|1164|220 Zebrafish picornavirus 1 Known PRJNA717374_CONTIG_2|Cyprivirus_A PRJNA717374_CONTIG_2 Cyprivirus A 1161 220 1 CLUSTER1_Cyprivirus_A|1164|220 PRJNA561212_P_NODE_3_length_8346_cov_49.070712_g2_i0|Cyprivirus_A|NTclustered|0|NA 1164 220 PRJNA717374 2 8273 24.201829 2002.217313 Cyprivirus A 2304617 Viruses Viruses 13570.0 0.0 Cyprivirus A Non-phage NTclustered PRJNA717374_P_NODE_2_length_8273_cov_24.201829_g1_i0   Zebrafish picornavirus 1 strain IDEXX/ZfPV-1/2017/USA, complete genome gi|2500378199|ref|NC_076245.1| 2563826 g1 i0 96.268 3.056932189 8280 299 100.0 9 1 8273 18 8294 25290 13570.0 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Cyprivirus A Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Zebrafish picornavirus 1 Cyprivirus A Zebrafish picornavirus 1 gi|2500378199|ref|NC_076245.1| Viruses Viruses Viruses Viruses 13570.0 4581.0 0.0 0.0
4011 4011 PRJNA717374_CONTIG_12684|Cyprivirus_A|CLUSTER1_Cyprivirus_A|1164|220 Zebrafish picornavirus 1 Known PRJNA717374_CONTIG_12684|Cyprivirus_A PRJNA717374_CONTIG_12684 Cyprivirus A 1161 220 1 CLUSTER1_Cyprivirus_A|1164|220 PRJNA561212_P_NODE_3_length_8346_cov_49.070712_g2_i0|Cyprivirus_A|NTclustered|0|NA 1164 220 PRJNA717374 12684 200 5.023622 10.047244 Cyprivirus A 2304617 Viruses Viruses 337.0 4.28e-88 Cyprivirus A Non-phage NTclustered PRJNA717374_P_NODE_12684_length_200_cov_5.023622_g12549_i0   Zebrafish picornavirus 1 isolate CZAR/ZfPV/2018/Utah/USA, complete genome gi|1812398529|gb|MN524064.1| 2563826 g12549 i0 97.0 3.0 200 6 100.0 0 1 200 7527 7726 600 337.0 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Cyprivirus A Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Zebrafish picornavirus 1 Cyprivirus A Zebrafish picornavirus 1 gi|1812398529|gb|MN524064.1| Viruses Viruses Viruses Viruses 337.0 149.0 4.28e-88 5.06e-40
8343 8343 PRJNA717374_CONTIG_17|Crocidura_lasiura_picornavirus_2|CLUSTER1_Coleura_bat_picornavirus|100|37 Zebrafish jaw picornavirus Novel PRJNA717374_CONTIG_17|Crocidura_lasiura_picornavirus_2 PRJNA717374_CONTIG_17 Coleura bat picornavirus 89 37 1 CLUSTER1_Coleura_bat_picornavirus|100|37 PRJNA670521_P_NODE_5_length_8668_cov_14.621640_g3_i0|Kobuvirus|NR|2.54e-153|NA 93 37 PRJNA717374 17 3258 3.423234 111.5289637 Crocidura lasiura picornavirus 2 3139481 Viruses Viruses 147.0 9.730000000000001e-32 Crocidura lasiura picornavirus 2 Non-phage NR PRJNA717374_P_NODE_17_length_3258_cov_3.423234_g13_i0   WZI33259.1 MAG: polyprotein [Crocidura lasiura picornavirus 2] WZI33259.1 3139481 g13 i0 25.2 2.494475138 844 526 74.1 31 2415 1 275 1052 8127 147.0 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales     Crocidura lasiura picornavirus 2 Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Kobuvirus;Zebrafish jaw picornavirus   Crocidura lasiura picornavirus 2     Viruses   Viruses   147.0   9.730000000000001e-32
8349 8349 PRJNA717374_CONTIG_147|Coleura_bat_picornavirus|CLUSTER1_Coleura_bat_picornavirus|100|37 Zebrafish jaw picornavirus Novel PRJNA717374_CONTIG_147|Coleura_bat_picornavirus PRJNA717374_CONTIG_147 Coleura bat picornavirus 89 37 1 CLUSTER1_Coleura_bat_picornavirus|100|37 PRJNA670521_P_NODE_5_length_8668_cov_14.621640_g3_i0|Kobuvirus|NR|2.54e-153|NA 93 37 PRJNA717374 147 1602 6.386527 102.3121625 Coleura bat picornavirus 3141868 Viruses Viruses 421.0 5.96e-127 Coleura bat picornavirus Non-phage NR PRJNA717374_P_NODE_147_length_1602_cov_6.386527_g99_i0   XBH24011.1 MAG: polyprotein [Coleura bat picornavirus] XBH24011.1 3141868 g99 i0 51.0 2.447565543 435 203 80.7 8 1586 294 1957 2385 3921 421.0 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales     Coleura bat picornavirus Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Kobuvirus;Zebrafish jaw picornavirus   Coleura bat picornavirus     Viruses   Viruses   421.0   5.96e-127
8367 8367 PRJNA717374_CONTIG_2654|Mink_kobuvirus|CLUSTER1_Coleura_bat_picornavirus|100|37 Zebrafish jaw picornavirus Novel PRJNA717374_CONTIG_2654|Mink_kobuvirus PRJNA717374_CONTIG_2654 Coleura bat picornavirus 89 37 1 CLUSTER1_Coleura_bat_picornavirus|100|37 PRJNA670521_P_NODE_5_length_8668_cov_14.621640_g3_i0|Kobuvirus|NR|2.54e-153|NA 93 37 PRJNA717374 2654 405 3.638554 14.7361437 Mink kobuvirus 3242813 Viruses Viruses 68.2 3.16e-10 Mink kobuvirus Non-phage NR PRJNA717374_P_NODE_2654_length_405_cov_3.638554_g2519_i0   XEQ84337.1 polyprotein, partial [Mink kobuvirus] XEQ84337.1 3242813 g2519 i0 32.9 1.081481481 146 85 98.5 3 405 7 310 455 438 68.2 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae Kobuvirus Mink kobuvirus Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Kobuvirus;Zebrafish jaw picornavirus   Mink kobuvirus     Viruses   Viruses   68.2   3.16e-10
8381 8381 PRJNA717374_CONTIG_7006|Kobuvirus|CLUSTER1_Coleura_bat_picornavirus|100|37 Zebrafish jaw picornavirus Novel PRJNA717374_CONTIG_7006|Kobuvirus PRJNA717374_CONTIG_7006 Coleura bat picornavirus 89 37 1 CLUSTER1_Coleura_bat_picornavirus|100|37 PRJNA670521_P_NODE_5_length_8668_cov_14.621640_g3_i0|Kobuvirus|NR|2.54e-153|NA 93 37 PRJNA717374 7006 271 3.525253 9.55343563 Kobuvirus 194960 Viruses Viruses 92.0 1.62e-20 Kobuvirus Non-phage NR PRJNA717374_P_NODE_7006_length_271_cov_3.525253_g6871_i0   QCI55838.1 3D polymerase, partial [Porcine kobuvirus] QCI55838.1 1156769 g6871 i0 54.3 9.110701107 92 40 99.6 2 270 1 105 196 2469 92.0 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae Kobuvirus Kobuvirus cebes Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Kobuvirus;Zebrafish jaw picornavirus   Kobuvirus     Viruses   Viruses   92.0   1.62e-20
10280 10280 PRJNA717374_CONTIG_1|Salmon_aquaparamyxovirus|CLUSTER1_Salmon_aquaparamyxovirus|1|1 Zebrafish hepatic paramyxovirus Novel PRJNA717374_CONTIG_1|Salmon_aquaparamyxovirus PRJNA717374_CONTIG_1 Salmon aquaparamyxovirus 1 1 1 CLUSTER1_Salmon_aquaparamyxovirus|1|1 PRJNA717374_P_NODE_1_length_15653_cov_331.219705_g0_i0|Salmon_aquaparamyxovirus|NR|0|NA 1 1 PRJNA717374 1 15653 331.219705 51845.82042 Salmon aquaparamyxovirus 381543 Viruses Viruses 2304.0 0.0 Salmon aquaparamyxovirus Non-phage NR PRJNA717374_P_NODE_1_length_15653_cov_331.219705_g0_i0   AYN62588.1 polymerase [Salmon aquaparamyxovirus] AYN62588.1 381543 g0 i0 52.9 0.848271897 2213 1025 42.2 7 8649 15257 1 2205 13278 2304.0 1.0 Viruses Riboviria Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae Aquaparamyxovirus Aquaparamyxovirus salmonis Viruses;Riboviria;Orthornavirae;Negarnaviricota;Monjiviricetes;Mononegavirales;Paramyxoviridae;Aquaparamyxovirus;Zebrafish hepatic paramyxovirus   Salmon aquaparamyxovirus     Viruses   Viruses   2304.0   0.0

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;