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viruses_fish_associated_curated

6 rows where bioproject = "PRJNA312107"

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tax_family_NTorNR 4

tax_genus_NTorNR 2

bioproject 1

  • PRJNA312107 · 6 ✖
Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
1840 1840 PRJNA312107_CONTIG_1|Zebrafish_picornavirus_2|CLUSTER1_Zebrafish_picornavirus_2|1382|320 Danio blood picornavirus/Zebrafish picornavirus 2 Novel PRJNA312107_CONTIG_1|Zebrafish_picornavirus_2 PRJNA312107_CONTIG_1 Zebrafish picornavirus 2 1369 320 1 CLUSTER1_Zebrafish_picornavirus_2|1382|320 PRJNA924006_P_NODE_1_length_7278_cov_16.682998_g0_i0|Zebrafish_picornavirus_2|NR|0|NA 1370 320 PRJNA312107 1 7196 13.403106 964.4875078 Zebrafish picornavirus 2 3063761 Viruses Viruses 2497.0 0.0 Zebrafish picornavirus 2 Non-phage NTclustered PRJNA312107_P_NODE_1_length_7196_cov_13.403106_g0_i0   Zebrafish picornavirus 2 isolate AU/2020 polyprotein gene, complete cds gi|2551699335|gb|OK619588.1| 3063761 g0 i0 92.099 0.666342412 1772 136 67.0 4 1 1770 7098 5329 4795 2497.0 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Zebrafish picornavirus 2 Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Danio blood picornavirus/Zebrafish picornavirus 2 Zebrafish picornavirus 2 Zebrafish picornavirus 2 gi|2551699335|gb|OK619588.1| Viruses Viruses Viruses Viruses 2497.0 2482.0 0.0 0.0
5841 5841 PRJNA312107_CONTIG_23175|Carp_edema_virus|CLUSTER3_Carp_edema_virus|359|69 Zebrafish jaw poxvirus Novel PRJNA312107_CONTIG_23175|Carp_edema_virus PRJNA312107_CONTIG_23175 Carp edema virus 4680 143 36 CLUSTER3_Carp_edema_virus|359|69 PRJNA318414_P_NODE_2_length_28050_cov_65.213304_g1_i0|Carp_edema_virus|NR|0|NA 358 69 PRJNA312107 23175 165 0.896552 1.4793108 Carp edema virus 1653087 Viruses Viruses 42.0 0.0244 Carp edema virus Non-phage NR PRJNA312107_P_NODE_23175_length_165_cov_0.896552_g23009_i0   BCT22717.1 B22R family protein [Carp edema virus] BCT22717.1 1653087 g23009 i0 40.0 0.818181818 45 26 80.0 1 2 133 873 917 135 42.0 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae   Carp edema virus Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus   Carp edema virus     Viruses   Viruses   42.0   0.0244
8999 8999 PRJNA312107_CONTIG_6076|Carp_edema_virus|CLUSTER20_Carp_edema_virus|75|44 Zebrafish jaw poxvirus Novel PRJNA312107_CONTIG_6076|Carp_edema_virus PRJNA312107_CONTIG_6076 Carp edema virus 4680 143 36 CLUSTER20_Carp_edema_virus|75|44 PRJNA318414_P_NODE_7_length_17473_cov_56.726324_g6_i0|Carp_edema_virus|NR|0|NA 69 42 PRJNA312107 6076 288 1.305439 3.75966432 Carp edema virus 1653087 Viruses Viruses 50.8 8.59e-05 Carp edema virus Non-phage NR PRJNA312107_P_NODE_6076_length_288_cov_1.305439_g5910_i0   BCT22628.1 hypothetical protein [Carp edema virus] BCT22628.1 1653087 g5910 i0 36.2 0.71875 69 43 71.9 1 287 81 197 264 207 50.8 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae   Carp edema virus Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus   Carp edema virus     Viruses   Viruses   50.8   8.59e-05
9792 9792 PRJNA312107_CONTIG_21068|Nicoomyvirus|CLUSTER1_Fish-associated_parvo-like_hybrid_virus|21|14 Fish-associated parvo-like hybrid virus Endogenous or not fish-associated PRJNA312107_CONTIG_21068|Nicoomyvirus PRJNA312107_CONTIG_21068 Fish-associated parvo-like hybrid virus 35 19 4 CLUSTER1_Fish-associated_parvo-like_hybrid_virus|21|14 MT138265_1_MAG_Nicoomyvirus_lizumae_isolate_par077par1_genomic_sequence 21 14 PRJNA312107 21068 167 0.881356 1.47186452 Nicoomyvirus 3425078 Viruses Viruses 309.0 7.53e-80 Nicoomyvirus Non-phage NTclustered PRJNA312107_P_NODE_21068_length_167_cov_0.881356_g20902_i0   Parvovirus NIH-CQV putative 15-kDa protein, putative replication associated protein (rep), and putative capsid protein (cap) genes, complete cds gi|530787446|ref|NC_022089.1| 1341019 g20902 i0 100.0 15.0 167 0 100.0 0 1 167 885 1051 2505 309.0 1.0 Viruses Monodnaviria Shotokuvirae Cressdnaviricota Arfiviricetes Lineavirales Oomyviridae Nicoomyvirus Nicoomyvirus moldensis Viruses;Monodnaviria;Shotokuvirae;Cossaviricota;Quintoviricetes;Piccovirales;Parvoviridae;Fish-associated parvo-like hybrid virus Nicoomyvirus Parvo-like hybrid virus UC9 gi|530787446|ref|NC_022089.1| Viruses Viruses Viruses Viruses 309.0 114.0 7.53e-80 1.47e-28
9968 9968 PRJNA312107_CONTIG_18951|Grus_japonensis_parvo-like_hybrid_virus|CLUSTER2_Fish-associated_parvo-like_hybrid_virus|14|7 Fish-associated parvo-like hybrid virus Endogenous or not fish-associated PRJNA312107_CONTIG_18951|Grus_japonensis_parvo-like_hybrid_virus PRJNA312107_CONTIG_18951 Fish-associated parvo-like hybrid virus 35 19 4 CLUSTER2_Fish-associated_parvo-like_hybrid_virus|14|7 PRJNA784979_S_NODE_320_length_2507_cov_3.719284_g317_i0|Fish-associated_parvo-like_hybrid_virus|NTclustered|0|NA 14 7 PRJNA312107 18951 169 0.866667 1.46466723 Grus japonensis parvo-like hybrid virus 2794511 Viruses Viruses 45.1 0.0021 Grus japonensis parvo-like hybrid virus Non-phage NR PRJNA312107_P_NODE_18951_length_169_cov_0.866667_g18785_i0   QTZ83196.1 MAG: capsid protein [Grus japonensis parvo-like hybrid virus] QTZ83196.1 2794511 g18785 i0 64.5 0.550295858 31 11 55.0 0 1 93 299 329 93 45.1 1.0 Viruses Monodnaviria Shotokuvirae Cressdnaviricota Arfiviricetes Lineavirales Oomyviridae Nicoomyvirus Nicoomyvirus peneszensis Viruses;Monodnaviria;Shotokuvirae;Cossaviricota;Quintoviricetes;Piccovirales;Parvoviridae;Fish-associated parvo-like hybrid virus   Grus japonensis parvo-like hybrid virus     Viruses   Viruses   45.1   0.0021
10218 10218 PRJNA312107_CONTIG_25980|Psittaciform_aveparvovirus|CLUSTER2_Psittacidae_aveparvovirus|3|3 Psittacidae aveparvovirus Endogenous or not fish-associated PRJNA312107_CONTIG_25980|Psittaciform_aveparvovirus PRJNA312107_CONTIG_25980 Psittacidae aveparvovirus 18 10 4 CLUSTER2_Psittacidae_aveparvovirus|3|3 PRJNA630162_P_NODE_16732_length_457_cov_2.938725_g15229_i0|Psittacidae_aveparvovirus|NR|1.21e-18|NA 3 3 PRJNA312107 25980 162 0.920354 1.49097348 Psittaciform aveparvovirus 3042447 Viruses Viruses 43.9 0.00498 Psittaciform aveparvovirus Non-phage NR PRJNA312107_P_NODE_25980_length_162_cov_0.920354_g25814_i0   WGL41068.1 replication protein [Psittaciform aveparvovirus] WGL41068.1 3042447 g25814 i0 37.0 1.0 54 26 94.4 2 156 4 9 57 162 43.9 1.0 Viruses Monodnaviria Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae Aveparvovirus Psittaciform aveparvovirus Viruses;Monodnaviria;Shotokuvirae;Cossaviricota;Quintoviricetes;Piccovirales;Parvoviridae;Aveparvovirus;Psittacidae aveparvovirus   Psittaciform aveparvovirus     Viruses   Viruses   43.9   0.00498

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;