metadata: viruses_fish_associated_curated: 5 rows where bioproject = "PRJNA1105232"

5 rows where bioproject = "PRJNA1105232"

descending

Link	rowid ▼	contig_withLCA_withcluster	clusterLCA_curated	Category	contig_withLCA	shortcontigname	clusterLCA	clusterLCAcurated_contigcount	clusterLCAcurated_bioprojectcount	clusterLCAcurated_clustercount	shortclustername	cluster	clustersize	bioprojectsbycluster	bioproject	node	length	coverage	rel_abundance	taxname_lca_NTorNR	taxid_lca_NTorNR	taxoncategory_NTorNR	taxoncategorysimple_NTorNR	bits_NTorNR	evalue_NTorNR	viruscategory_NTorNR	viruscategorysimple_NTorNR	analysis_used	contig_name	target_title_NTorNR	target_NTorNR	taxid_NTorNR	gene_NTorNR	allele_NTorNR	pident_NTorNR	sumperc_cov_NTorNR	alnlen_NTorNR	mismatch_NTorNR	qcov_NTorNR	gapopen_NTorNR	qstart_NTorNR	qend_NTorNR	tstart_NTorNR	tend_NTorNR	sumalnlen_NTorNR	maxbits_NTorNR	bits_percmax_NTorNR	tax_superkingdom_NTorNR	tax_clade_NTorNR	tax_kingdom_NTorNR	tax_phylum_NTorNR	tax_class_NTorNR	tax_order_NTorNR	tax_family_NTorNR	tax_genus_NTorNR	tax_species_NTorNR	classification	taxname_lca_NTclustered	taxname_lca_NR	target_NTclustered	taxoncategory_NTclustered	taxoncategory_NR	taxoncategorysimple_NTclustered	taxoncategorysimple_NR	bits_NTclustered	bits_NR	evalue_NTclustered	evalue_NR
3513	3513	PRJNA1105232_CONTIG_1576\|Cyprivirus_A\|CLUSTER1_Cyprivirus_A\|1164\|220	Zebrafish picornavirus 1	Known	PRJNA1105232_CONTIG_1576\|Cyprivirus_A	PRJNA1105232_CONTIG_1576	Cyprivirus A	1161	220	1	CLUSTER1_Cyprivirus_A\|1164\|220	PRJNA561212_P_NODE_3_length_8346_cov_49.070712_g2_i0\|Cyprivirus_A\|NTclustered\|0\|NA	1164	220	PRJNA1105232	1576	410	48.66759	199.537119	Cyprivirus A	2304617	Viruses	Viruses	712.0	0.0	Cyprivirus A	Non-phage	NTclustered	PRJNA1105232_S_NODE_1576_length_410_cov_48.667590_g1361_i0	Zebrafish picornavirus 1 isolate CZAR/ZfPV/2018/Utah/USA, complete genome	gi\|1812398529\|gb\|MN524064.1\|	2563826	g1361	i0	98.049	4.263414634	410	7	100.0	1	1	410	8221	7813	1748	712.0	1.0	Viruses	Riboviria	Orthornavirae	Pisuviricota	Pisoniviricetes	Picornavirales	Picornaviridae		Cyprivirus A	Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Zebrafish picornavirus 1	Cyprivirus A		gi\|1812398529\|gb\|MN524064.1\|	Viruses		Viruses		712.0		0.0
4009	4009	PRJNA1105232_CONTIG_12651\|Cyprivirus_A\|CLUSTER1_Cyprivirus_A\|1164\|220	Zebrafish picornavirus 1	Known	PRJNA1105232_CONTIG_12651\|Cyprivirus_A	PRJNA1105232_CONTIG_12651	Cyprivirus A	1161	220	1	CLUSTER1_Cyprivirus_A\|1164\|220	PRJNA561212_P_NODE_3_length_8346_cov_49.070712_g2_i0\|Cyprivirus_A\|NTclustered\|0\|NA	1164	220	PRJNA1105232	12651	183	1.014925	1.85731275	Cyprivirus A	2304617	Viruses	Viruses	250.0	5.15e-62	Cyprivirus A	Non-phage	NTclustered	PRJNA1105232_S_NODE_12651_length_183_cov_1.014925_g12435_i0	Zebrafish picornavirus 1 strain IDEXX/ZfPV-1/2017/USA, complete genome	gi\|2500378199\|ref\|NC_076245.1\|	2563826	g12435	i0	98.582	3.06557377	141	2	100.0	0	43	183	5635	5495	561	250.0	1.0	Viruses	Riboviria	Orthornavirae	Pisuviricota	Pisoniviricetes	Picornavirales	Picornaviridae		Cyprivirus A	Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Zebrafish picornavirus 1	Cyprivirus A	Zebrafish picornavirus 1	gi\|2500378199\|ref\|NC_076245.1\|	Viruses	Viruses	Viruses	Viruses	250.0	95.1	5.15e-62	5.8900000000000004e-21
9167	9167	PRJNA1105232_CONTIG_7797\|Piscichuvirus\|CLUSTER1_Salarius_guttatus_piscichuvirus\|63\|56	Salarius guttatus piscichuvirus	Endogenous or not fish-associated	PRJNA1105232_CONTIG_7797\|Piscichuvirus	PRJNA1105232_CONTIG_7797	Salarius guttatus piscichuvirus	67	58	5	CLUSTER1_Salarius_guttatus_piscichuvirus\|63\|56	PRJNA649806_P_NODE_3355_length_644_cov_1.443082_g3086_i0\|Salarius_guttatus_piscichuvirus\|NR\|7.17e-28\|NA	63	56	PRJNA1105232	7797	222	3.606936	8.00739792	Piscichuvirus	2842963	Viruses	Viruses	59.7	3e-08	Piscichuvirus	Non-phage	NR	PRJNA1105232_S_NODE_7797_length_222_cov_3.606936_g7581_i0	QHX39772.1 RNA-dependent RNA polymerase [Herr Frank virus 1]	QHX39772.1	2847181	g7581	i0	44.6	2.0	74	39	97.3	1	221	6	6	79	444	59.7	1.0	Viruses	Riboviria	Orthornavirae	Negarnaviricota	Monjiviricetes	Jingchuvirales	Chuviridae	Piscichuvirus	Piscichuvirus franki	Viruses;Riboviria;Orthornavirae;Negarnaviricota;Monjiviricetes;Jingchuvirales;Chuviridae;Piscichuvirus;Salarius guttatus piscichuvirus		Piscichuvirus			Viruses		Viruses		59.7		3e-08
9384	9384	PRJNA1105232_CONTIG_15848\|Pimephales_minnow_adintovirus\|CLUSTER1_Pimephales_minnow_adintovirus\|59\|59	Pimephales minnow adintovirus	Endogenous or not fish-associated	PRJNA1105232_CONTIG_15848\|Pimephales_minnow_adintovirus	PRJNA1105232_CONTIG_15848	Pimephales minnow adintovirus	168	104	20	CLUSTER1_Pimephales_minnow_adintovirus\|59\|59	PRJNA551453_P_NODE_4881_length_284_cov_1.883117_g4799_i0\|Pimephales_minnow_adintovirus\|NR\|1.25e-07\|NA	52	52	PRJNA1105232	15848	167	0.881356	1.47186452	Pimephales minnow adintovirus	2609864	Viruses	Viruses	58.2	2.82e-08	Pimephales minnow adintovirus	Non-phage	NR	PRJNA1105232_S_NODE_15848_length_167_cov_0.881356_g15632_i0	DAC81394.1 TPA_asm: FtsK [Pimephales minnow adintovirus]	DAC81394.1	2609864	g15632	i0	69.4	0.646706587	36	11	64.7	0	110	3	7	42	108	58.2	1.0	Viruses	Varidnaviria	Bamfordvirae	Preplasmiviricota	Polintoviricetes	Orthopolintovirales	Adintoviridae		Pimephales minnow adintovirus	Viruses;Varidnaviria;Bamfordvirae;Preplasmiviricota;Polintoviricetes;Orthopolintovirales;Adintoviridae;Pimephales minnow adintovirus		Pimephales minnow adintovirus			Viruses		Viruses		58.2		2.82e-08
9981	9981	PRJNA1105232_CONTIG_12917\|Adintovirus_anguilla1\|CLUSTER1_Adintovirus_anguilla1\|13\|12	Adintovirus anguilla10665	Endogenous or not fish-associated	PRJNA1105232_CONTIG_12917\|Adintovirus_anguilla1	PRJNA1105232_CONTIG_12917	Adintovirus anguilla1	34	19	10	CLUSTER1_Adintovirus_anguilla1\|13\|12	PRJNA1034995_S_NODE_18603_length_409_cov_23.456284_g18448_i0\|Astyanax_tetra_cavefish_adintovirus\|NR\|1.59e-05\|NA	13	12	PRJNA1105232	12917	181	2.05303	3.7159843	Adintovirus anguilla1	3115889	Viruses	Viruses	63.9	6.96e-11	Adintovirus anguilla1	Non-phage	NR	PRJNA1105232_S_NODE_12917_length_181_cov_2.053030_g12701_i0	DBA49781.1 MAG TPA_asm: Cupiennin [Adintovirus anguilla10665]	DBA49781.1	3115889	g12701	i0	62.2	0.745856354	45	17	74.6	0	171	37	7	51	135	63.9	1.0	Viruses	Varidnaviria	Bamfordvirae	Preplasmiviricota	Polintoviricetes	Orthopolintovirales	Adintoviridae		Adintovirus anguilla10665	Viruses;Varidnaviria;Bamfordvirae;Preplasmiviricota;Polintoviricetes;Orthopolintovirales;Adintoviridae;Adintovirus anguilla10665		Adintovirus anguilla1			Viruses		Viruses		63.9		6.96e-11

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;