RNAquarium Metadata Server
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viruses_fish_associated_curated

3 rows where bioproject = "PRJNA1084193" and clusterLCA_curated = "Zebrafish gut calicivirus"

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tax_species_NTorNR 2

tax_genus_NTorNR 1

tax_family_NTorNR 1

clusterLCA_curated 1

  • Zebrafish gut calicivirus · 3 ✖

bioproject 1

  • PRJNA1084193 · 3 ✖

Category 1

Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
9512 9512 PRJNA1084193_CONTIG_26732|Barramundi_calicivirus_1|CLUSTER1_Barramundi_calicivirus_1|53|15 Zebrafish gut calicivirus Novel PRJNA1084193_CONTIG_26732|Barramundi_calicivirus_1 PRJNA1084193_CONTIG_26732 Barramundi calicivirus 1 48 14 1 CLUSTER1_Barramundi_calicivirus_1|53|15 PRJNA738523_P_NODE_1_length_7247_cov_15.105241_g0_i0|Barramundi_calicivirus_1|NR|0|NA 49 15 PRJNA1084193 26732 421 1.491379 6.27870559 Barramundi calicivirus 1 3162777 Viruses Viruses 116.0 5.6200000000000004e-27 Barramundi calicivirus 1 Non-phage NR PRJNA1084193_P_NODE_26732_length_421_cov_1.491379_g26040_i0   XBS25272.1 MAG: ORF1 protein [Barramundi calicivirus 1] XBS25272.1 3162777 g26040 i0 51.2 0.876484561 123 57 86.2 2 363 1 1646 1767 369 116.0 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Caliciviridae   Barramundi calicivirus 1 Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Caliciviridae;Zebrafish gut calicivirus   Barramundi calicivirus 1     Viruses   Viruses   116.0   5.6200000000000004e-27
9521 9521 PRJNA1084193_CONTIG_39505|Barramundi_calicivirus_1|CLUSTER1_Barramundi_calicivirus_1|53|15 Zebrafish gut calicivirus Novel PRJNA1084193_CONTIG_39505|Barramundi_calicivirus_1 PRJNA1084193_CONTIG_39505 Barramundi calicivirus 1 48 14 1 CLUSTER1_Barramundi_calicivirus_1|53|15 PRJNA738523_P_NODE_1_length_7247_cov_15.105241_g0_i0|Barramundi_calicivirus_1|NR|0|NA 49 15 PRJNA1084193 39505 355 0.946809 3.36117195 Barramundi calicivirus 1 3162777 Viruses Viruses 119.0 1.94e-28 Barramundi calicivirus 1 Non-phage NR PRJNA1084193_P_NODE_39505_length_355_cov_0.946809_g38811_i0   XBS25272.1 MAG: ORF1 protein [Barramundi calicivirus 1] XBS25272.1 3162777 g38811 i0 48.7 0.954929577 113 57 95.5 1 353 15 1814 1925 339 119.0 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Caliciviridae   Barramundi calicivirus 1 Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Caliciviridae;Zebrafish gut calicivirus   Barramundi calicivirus 1     Viruses   Viruses   119.0   1.94e-28
9523 9523 PRJNA1084193_CONTIG_55875|Salovirus_sp.|CLUSTER1_Barramundi_calicivirus_1|53|15 Zebrafish gut calicivirus Novel PRJNA1084193_CONTIG_55875|Salovirus_sp. PRJNA1084193_CONTIG_55875 Barramundi calicivirus 1 48 14 1 CLUSTER1_Barramundi_calicivirus_1|53|15 PRJNA738523_P_NODE_1_length_7247_cov_15.105241_g0_i0|Barramundi_calicivirus_1|NR|0|NA 49 15 PRJNA1084193 55875 304 1.164502 3.54008608 Salovirus sp. 2809835 Viruses Viruses 45.8 0.00667 Salovirus sp. Non-phage NR PRJNA1084193_P_NODE_55875_length_304_cov_1.164502_g55181_i0   WRW35011.1 polyprotein [Salovirus sp.] WRW35011.1 2809835 g55181 i0 41.9 0.611842105 62 36 61.2 0 303 118 2093 2154 186 45.8 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Caliciviridae Salovirus Salovirus sp. Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Caliciviridae;Zebrafish gut calicivirus   Salovirus sp.     Viruses   Viruses   45.8   0.00667

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;