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viruses_fish_associated_curated

9 rows where bioproject = "PRJNA1084193"

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tax_family_NTorNR 2

tax_genus_NTorNR 1

bioproject 1

  • PRJNA1084193 · 9 ✖

Category 1

Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
4929 4929 PRJNA1084193_CONTIG_46189|Carp_edema_virus|CLUSTER1_Carp_edema_virus|632|87 Zebrafish jaw poxvirus Novel PRJNA1084193_CONTIG_46189|Carp_edema_virus PRJNA1084193_CONTIG_46189 Carp edema virus 4680 143 36 CLUSTER1_Carp_edema_virus|632|87 PRJNA1075480_S_NODE_3_length_24555_cov_43.250551_g1_i0|Carp_edema_virus|NR|0|NA 629 87 PRJNA1084193 46189 331 1.492248 4.93934088 Carp edema virus 1653087 Viruses Viruses 177.0 1.38e-49 Carp edema virus Non-phage NR PRJNA1084193_P_NODE_46189_length_331_cov_1.492248_g45495_i0   BCT22634.1 early transcription factor [Carp edema virus] BCT22634.1 1653087 g45495 i0 78.2 0.996978852 110 24 99.7 0 1 330 223 332 330 177.0 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae   Carp edema virus Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus   Carp edema virus     Viruses   Viruses   177.0   1.38e-49
6661 6661 PRJNA1084193_CONTIG_10327|Carp_edema_virus|CLUSTER6_Carp_edema_virus|274|111 Zebrafish jaw poxvirus Novel PRJNA1084193_CONTIG_10327|Carp_edema_virus PRJNA1084193_CONTIG_10327 Carp edema virus 4680 143 36 CLUSTER6_Carp_edema_virus|274|111 PRJNA1075480_S_NODE_10_length_11763_cov_107.476048_g4_i0|Carp_edema_virus|NR|0|NA 264 107 PRJNA1084193 10327 656 2.346484 15.39293504 Carp edema virus 1653087 Viruses Viruses 134.0 6.3399999999999995e-34 Carp edema virus Non-phage NR PRJNA1084193_P_NODE_10327_length_656_cov_2.346484_g9682_i0   BCT22626.1 putative DNA-binding virion core protein [Carp edema virus] BCT22626.1 1653087 g9682 i0 38.9 0.928353659 203 110 87.8 4 655 80 113 312 609 134.0 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae   Carp edema virus Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus   Carp edema virus     Viruses   Viruses   134.0   6.3399999999999995e-34
6696 6696 PRJNA1084193_CONTIG_30679|Carp_edema_virus|CLUSTER6_Carp_edema_virus|274|111 Zebrafish jaw poxvirus Novel PRJNA1084193_CONTIG_30679|Carp_edema_virus PRJNA1084193_CONTIG_30679 Carp edema virus 4680 143 36 CLUSTER6_Carp_edema_virus|274|111 PRJNA1075480_S_NODE_10_length_11763_cov_107.476048_g4_i0|Carp_edema_virus|NR|0|NA 264 107 PRJNA1084193 30679 396 2.77709 10.9972764 Carp edema virus 1653087 Viruses Viruses 48.5 0.00165 Carp edema virus Non-phage NR PRJNA1084193_P_NODE_30679_length_396_cov_2.777090_g29987_i0   BCT22626.1 putative DNA-binding virion core protein [Carp edema virus] BCT22626.1 1653087 g29987 i0 32.7 0.787878788 104 67 76.5 2 91 393 3 106 312 48.5 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae   Carp edema virus Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus   Carp edema virus     Viruses   Viruses   48.5   0.00165
8516 8516 PRJNA1084193_CONTIG_41596|Carp_edema_virus|CLUSTER14_Carp_edema_virus|99|48 Zebrafish jaw poxvirus Novel PRJNA1084193_CONTIG_41596|Carp_edema_virus PRJNA1084193_CONTIG_41596 Carp edema virus 4680 143 36 CLUSTER14_Carp_edema_virus|99|48 PRJEB2894_P_NODE_9_length_7063_cov_23.806488_g8_i0|Carp_edema_virus|NR|1.47e-86|NA 98 47 PRJNA1084193 41596 347 0.711679 2.46952613 Carp edema virus 1653087 Viruses Viruses 69.7 4.34e-11 Carp edema virus Non-phage NR PRJNA1084193_P_NODE_41596_length_347_cov_0.711679_g40902_i0   BCT22684.1 hypothetical protein [Carp edema virus] BCT22684.1 1653087 g40902 i0 35.1 0.985590778 114 74 98.6 0 343 2 216 329 342 69.7 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae   Carp edema virus Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus   Carp edema virus     Viruses   Viruses   69.7   4.34e-11
8759 8759 PRJNA1084193_CONTIG_61449|Carp_edema_virus|CLUSTER17_Carp_edema_virus|89|39 Zebrafish jaw poxvirus Novel PRJNA1084193_CONTIG_61449|Carp_edema_virus PRJNA1084193_CONTIG_61449 Carp edema virus 4680 143 36 CLUSTER17_Carp_edema_virus|89|39 PRJNA854078_P_NODE_51_length_3466_cov_13.696729_g37_i0|Carp_edema_virus|NR|4.02e-76|NA 89 39 PRJNA1084193 61449 290 1.064516 3.0870964 Carp edema virus 1653087 Viruses Viruses 47.0 0.00208 Carp edema virus Non-phage NR PRJNA1084193_P_NODE_61449_length_290_cov_1.064516_g60755_i0   BCT22764.1 kelch-like protein [Carp edema virus] BCT22764.1 1653087 g60755 i0 35.5 0.786206897 76 41 74.5 3 38 253 518 589 228 47.0 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae   Carp edema virus Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus   Carp edema virus     Viruses   Viruses   47.0   0.00208
8847 8847 PRJNA1084193_CONTIG_88718|Carp_edema_virus|CLUSTER18_Carp_edema_virus|87|53 Zebrafish jaw poxvirus Novel PRJNA1084193_CONTIG_88718|Carp_edema_virus PRJNA1084193_CONTIG_88718 Carp edema virus 4680 143 36 CLUSTER18_Carp_edema_virus|87|53 PRJNA854078_P_NODE_15_length_5165_cov_11.858209_g9_i0|Carp_edema_virus|NR|2.41e-94|NA 86 52 PRJNA1084193 88718 246 2.219653 5.46034638 Carp edema virus 1653087 Viruses Viruses 68.6 4.28e-12 Carp edema virus Non-phage NR PRJNA1084193_P_NODE_88718_length_246_cov_2.219653_g88024_i0   UZH43387.1 DNA-binding virion core protein, partial [Carp edema virus] UZH43387.1 1653087 g88024 i0 42.7 2.0 82 46 100.0 1 1 246 65 145 492 68.6 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae   Carp edema virus Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus   Carp edema virus     Viruses   Viruses   68.6   4.28e-12
9512 9512 PRJNA1084193_CONTIG_26732|Barramundi_calicivirus_1|CLUSTER1_Barramundi_calicivirus_1|53|15 Zebrafish gut calicivirus Novel PRJNA1084193_CONTIG_26732|Barramundi_calicivirus_1 PRJNA1084193_CONTIG_26732 Barramundi calicivirus 1 48 14 1 CLUSTER1_Barramundi_calicivirus_1|53|15 PRJNA738523_P_NODE_1_length_7247_cov_15.105241_g0_i0|Barramundi_calicivirus_1|NR|0|NA 49 15 PRJNA1084193 26732 421 1.491379 6.27870559 Barramundi calicivirus 1 3162777 Viruses Viruses 116.0 5.6200000000000004e-27 Barramundi calicivirus 1 Non-phage NR PRJNA1084193_P_NODE_26732_length_421_cov_1.491379_g26040_i0   XBS25272.1 MAG: ORF1 protein [Barramundi calicivirus 1] XBS25272.1 3162777 g26040 i0 51.2 0.876484561 123 57 86.2 2 363 1 1646 1767 369 116.0 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Caliciviridae   Barramundi calicivirus 1 Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Caliciviridae;Zebrafish gut calicivirus   Barramundi calicivirus 1     Viruses   Viruses   116.0   5.6200000000000004e-27
9521 9521 PRJNA1084193_CONTIG_39505|Barramundi_calicivirus_1|CLUSTER1_Barramundi_calicivirus_1|53|15 Zebrafish gut calicivirus Novel PRJNA1084193_CONTIG_39505|Barramundi_calicivirus_1 PRJNA1084193_CONTIG_39505 Barramundi calicivirus 1 48 14 1 CLUSTER1_Barramundi_calicivirus_1|53|15 PRJNA738523_P_NODE_1_length_7247_cov_15.105241_g0_i0|Barramundi_calicivirus_1|NR|0|NA 49 15 PRJNA1084193 39505 355 0.946809 3.36117195 Barramundi calicivirus 1 3162777 Viruses Viruses 119.0 1.94e-28 Barramundi calicivirus 1 Non-phage NR PRJNA1084193_P_NODE_39505_length_355_cov_0.946809_g38811_i0   XBS25272.1 MAG: ORF1 protein [Barramundi calicivirus 1] XBS25272.1 3162777 g38811 i0 48.7 0.954929577 113 57 95.5 1 353 15 1814 1925 339 119.0 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Caliciviridae   Barramundi calicivirus 1 Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Caliciviridae;Zebrafish gut calicivirus   Barramundi calicivirus 1     Viruses   Viruses   119.0   1.94e-28
9523 9523 PRJNA1084193_CONTIG_55875|Salovirus_sp.|CLUSTER1_Barramundi_calicivirus_1|53|15 Zebrafish gut calicivirus Novel PRJNA1084193_CONTIG_55875|Salovirus_sp. PRJNA1084193_CONTIG_55875 Barramundi calicivirus 1 48 14 1 CLUSTER1_Barramundi_calicivirus_1|53|15 PRJNA738523_P_NODE_1_length_7247_cov_15.105241_g0_i0|Barramundi_calicivirus_1|NR|0|NA 49 15 PRJNA1084193 55875 304 1.164502 3.54008608 Salovirus sp. 2809835 Viruses Viruses 45.8 0.00667 Salovirus sp. Non-phage NR PRJNA1084193_P_NODE_55875_length_304_cov_1.164502_g55181_i0   WRW35011.1 polyprotein [Salovirus sp.] WRW35011.1 2809835 g55181 i0 41.9 0.611842105 62 36 61.2 0 303 118 2093 2154 186 45.8 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Caliciviridae Salovirus Salovirus sp. Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Caliciviridae;Zebrafish gut calicivirus   Salovirus sp.     Viruses   Viruses   45.8   0.00667

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;