RNAquarium Metadata Server
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viruses_fish_associated_curated

2 rows where Category = "Insufficient Evidence" and bioproject = "PRJNA1233465f"

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tax_species_NTorNR 1

tax_family_NTorNR 1

clusterLCA_curated 1

bioproject 1

  • PRJNA1233465f · 2 ✖

Category 1

  • Insufficient Evidence · 2 ✖

tax_genus_NTorNR 0

Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
10222 10222 PRJNA1233465f_CONTIG_55222|Astyanax_tetra_cavefish_adintovirus|CLUSTER4_Astyanax_tetra_cavefish_adintovirus|3|3 Astyanax tetra cavefish adintovirus Insufficient Evidence PRJNA1233465f_CONTIG_55222|Astyanax_tetra_cavefish_adintovirus PRJNA1233465f_CONTIG_55222 Astyanax tetra cavefish adintovirus 22 15 8 CLUSTER4_Astyanax_tetra_cavefish_adintovirus|3|3 PRJNA1233465e_S_NODE_32714_length_308_cov_4.830116_g31404_i0|Astyanax_tetra_cavefish_adintovirus|NR|3.71e-07|NA 3 3 PRJNA1233465f 55222 307 6.205426 19.05065782 Astyanax tetra cavefish adintovirus 2609866 Viruses Viruses 57.4 3.71e-07 Astyanax tetra cavefish adintovirus Non-phage NR PRJNA1233465f_S_NODE_55222_length_307_cov_6.205426_g52942_i0   DAC81253.1 TPA_asm: penton [Astyanax tetra cavefish adintovirus] DAC81253.1 2609866 g52942 i0 55.1 0.977198697 49 22 47.9 0 264 118 131 179 300 57.4 1.0 Viruses Varidnaviria Bamfordvirae Preplasmiviricota Polintoviricetes Orthopolintovirales Adintoviridae   Astyanax tetra cavefish adintovirus Viruses;Varidnaviria;Bamfordvirae;Preplasmiviricota;Polintoviricetes;Orthopolintovirales;Adintoviridae;Astyanax tetra cavefish adintovirus   Astyanax tetra cavefish adintovirus     Viruses   Viruses   57.4   3.71e-07
10486 10486 PRJNA1233465f_CONTIG_194813|Astyanax_tetra_cavefish_adintovirus|CLUSTER8_Astyanax_tetra_cavefish_adintovirus|1|1 Astyanax tetra cavefish adintovirus Insufficient Evidence PRJNA1233465f_CONTIG_194813|Astyanax_tetra_cavefish_adintovirus PRJNA1233465f_CONTIG_194813 Astyanax tetra cavefish adintovirus 22 15 8 CLUSTER8_Astyanax_tetra_cavefish_adintovirus|1|1 PRJNA1233465f_S_NODE_194813_length_180_cov_0.984733_g192533_i0|Astyanax_tetra_cavefish_adintovirus|NR|4.33e-12|NA 1 1 PRJNA1233465f 194813 180 0.984733 1.7725194 Astyanax tetra cavefish adintovirus 2609866 Viruses Viruses 69.7 4.33e-12 Astyanax tetra cavefish adintovirus Non-phage NR PRJNA1233465f_S_NODE_194813_length_180_cov_0.984733_g192533_i0   DAC81252.1 TPA_asm: integrase [Astyanax tetra cavefish adintovirus] DAC81252.1 2609866 g192533 i0 65.2 0.766666667 46 16 76.7 0 43 180 263 308 138 69.7 1.0 Viruses Varidnaviria Bamfordvirae Preplasmiviricota Polintoviricetes Orthopolintovirales Adintoviridae   Astyanax tetra cavefish adintovirus Viruses;Varidnaviria;Bamfordvirae;Preplasmiviricota;Polintoviricetes;Orthopolintovirales;Adintoviridae;Astyanax tetra cavefish adintovirus   Astyanax tetra cavefish adintovirus     Viruses   Viruses   69.7   4.33e-12

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;