metadata: viruses_fish_associated_curated: 4 rows where bioproject = "PRJNA1233465f"

4 rows where bioproject = "PRJNA1233465f"

descending

Link	rowid ▼	contig_withLCA_withcluster	clusterLCA_curated	Category	contig_withLCA	shortcontigname	clusterLCA	clusterLCAcurated_contigcount	clusterLCAcurated_bioprojectcount	clusterLCAcurated_clustercount	shortclustername	cluster	clustersize	bioprojectsbycluster	bioproject	node	length	coverage	rel_abundance	taxname_lca_NTorNR	taxid_lca_NTorNR	taxoncategory_NTorNR	taxoncategorysimple_NTorNR	bits_NTorNR	evalue_NTorNR	viruscategory_NTorNR	viruscategorysimple_NTorNR	analysis_used	contig_name	target_title_NTorNR	target_NTorNR	taxid_NTorNR	gene_NTorNR	allele_NTorNR	pident_NTorNR	sumperc_cov_NTorNR	alnlen_NTorNR	mismatch_NTorNR	qcov_NTorNR	qstart_NTorNR	qend_NTorNR	tstart_NTorNR	tend_NTorNR	sumalnlen_NTorNR	maxbits_NTorNR	bits_percmax_NTorNR	tax_superkingdom_NTorNR	tax_clade_NTorNR	tax_kingdom_NTorNR	tax_phylum_NTorNR	tax_class_NTorNR	tax_order_NTorNR	tax_family_NTorNR	tax_genus_NTorNR	tax_species_NTorNR	classification	taxname_lca_NR	taxoncategory_NR	taxoncategorysimple_NR	bits_NR	evalue_NR
8116	8116	PRJNA1233465f_CONTIG_23165\|African_cichlid_piscichuvirus\|CLUSTER1_African_cichlid_piscichuvirus\|150\|125	African cichlid piscichuvirus	Endogenous or not fish-associated	PRJNA1233465f_CONTIG_23165\|African_cichlid_piscichuvirus	PRJNA1233465f_CONTIG_23165	African cichlid piscichuvirus	151	125	2	CLUSTER1_African_cichlid_piscichuvirus\|150\|125	PRJEB66218_P_NODE_16107_length_1017_cov_4.283473_g14250_i0\|African_cichlid_piscichuvirus\|NR\|2.83e-43\|NA	150	125	PRJNA1233465f	23165	438	5.825193	25.51434534	African cichlid piscichuvirus	3065075	Viruses	Viruses	97.4	2.66e-20	African cichlid piscichuvirus	Non-phage	NR	PRJNA1233465f_S_NODE_23165_length_438_cov_5.825193_g20918_i0	WLN26256.1 MAG: L protein, partial [African cichlid piscichuvirus]	WLN26256.1	3065075	g20918	i0	51.1	0.616438356	90	44	61.6	12	281	145	234	270	97.4	1.0	Viruses	Riboviria	Orthornavirae	Negarnaviricota	Monjiviricetes	Jingchuvirales	Chuviridae	Piscichuvirus	African cichlid piscichuvirus	Viruses;Riboviria;Orthornavirae;Negarnaviricota;Monjiviricetes;Jingchuvirales;Chuviridae;Piscichuvirus;African cichlid piscichuvirus	African cichlid piscichuvirus	Viruses	Viruses	97.4	2.66e-20
9415	9415	PRJNA1233465f_CONTIG_247459\|Pimephales_minnow_adintovirus\|CLUSTER1_Pimephales_minnow_adintovirus\|59\|59	Pimephales minnow adintovirus	Endogenous or not fish-associated	PRJNA1233465f_CONTIG_247459\|Pimephales_minnow_adintovirus	PRJNA1233465f_CONTIG_247459	Pimephales minnow adintovirus	168	104	20	CLUSTER1_Pimephales_minnow_adintovirus\|59\|59	PRJNA551453_P_NODE_4881_length_284_cov_1.883117_g4799_i0\|Pimephales_minnow_adintovirus\|NR\|1.25e-07\|NA	52	52	PRJNA1233465f	247459	164	2.66087	4.3638268	Pimephales minnow adintovirus	2609864	Viruses	Viruses	58.2	2.71e-08	Pimephales minnow adintovirus	Non-phage	NR	PRJNA1233465f_S_NODE_247459_length_164_cov_2.660870_g245179_i0	DAC81394.1 TPA_asm: FtsK [Pimephales minnow adintovirus]	DAC81394.1	2609864	g245179	i0	69.4	0.658536585	36	11	65.9	109	2	7	42	108	58.2	1.0	Viruses	Varidnaviria	Bamfordvirae	Preplasmiviricota	Polintoviricetes	Orthopolintovirales	Adintoviridae		Pimephales minnow adintovirus	Viruses;Varidnaviria;Bamfordvirae;Preplasmiviricota;Polintoviricetes;Orthopolintovirales;Adintoviridae;Pimephales minnow adintovirus	Pimephales minnow adintovirus	Viruses	Viruses	58.2	2.71e-08
10222	10222	PRJNA1233465f_CONTIG_55222\|Astyanax_tetra_cavefish_adintovirus\|CLUSTER4_Astyanax_tetra_cavefish_adintovirus\|3\|3	Astyanax tetra cavefish adintovirus	Insufficient Evidence	PRJNA1233465f_CONTIG_55222\|Astyanax_tetra_cavefish_adintovirus	PRJNA1233465f_CONTIG_55222	Astyanax tetra cavefish adintovirus	22	15	8	CLUSTER4_Astyanax_tetra_cavefish_adintovirus\|3\|3	PRJNA1233465e_S_NODE_32714_length_308_cov_4.830116_g31404_i0\|Astyanax_tetra_cavefish_adintovirus\|NR\|3.71e-07\|NA	3	3	PRJNA1233465f	55222	307	6.205426	19.05065782	Astyanax tetra cavefish adintovirus	2609866	Viruses	Viruses	57.4	3.71e-07	Astyanax tetra cavefish adintovirus	Non-phage	NR	PRJNA1233465f_S_NODE_55222_length_307_cov_6.205426_g52942_i0	DAC81253.1 TPA_asm: penton [Astyanax tetra cavefish adintovirus]	DAC81253.1	2609866	g52942	i0	55.1	0.977198697	49	22	47.9	264	118	131	179	300	57.4	1.0	Viruses	Varidnaviria	Bamfordvirae	Preplasmiviricota	Polintoviricetes	Orthopolintovirales	Adintoviridae		Astyanax tetra cavefish adintovirus	Viruses;Varidnaviria;Bamfordvirae;Preplasmiviricota;Polintoviricetes;Orthopolintovirales;Adintoviridae;Astyanax tetra cavefish adintovirus	Astyanax tetra cavefish adintovirus	Viruses	Viruses	57.4	3.71e-07
10486	10486	PRJNA1233465f_CONTIG_194813\|Astyanax_tetra_cavefish_adintovirus\|CLUSTER8_Astyanax_tetra_cavefish_adintovirus\|1\|1	Astyanax tetra cavefish adintovirus	Insufficient Evidence	PRJNA1233465f_CONTIG_194813\|Astyanax_tetra_cavefish_adintovirus	PRJNA1233465f_CONTIG_194813	Astyanax tetra cavefish adintovirus	22	15	8	CLUSTER8_Astyanax_tetra_cavefish_adintovirus\|1\|1	PRJNA1233465f_S_NODE_194813_length_180_cov_0.984733_g192533_i0\|Astyanax_tetra_cavefish_adintovirus\|NR\|4.33e-12\|NA	1	1	PRJNA1233465f	194813	180	0.984733	1.7725194	Astyanax tetra cavefish adintovirus	2609866	Viruses	Viruses	69.7	4.33e-12	Astyanax tetra cavefish adintovirus	Non-phage	NR	PRJNA1233465f_S_NODE_194813_length_180_cov_0.984733_g192533_i0	DAC81252.1 TPA_asm: integrase [Astyanax tetra cavefish adintovirus]	DAC81252.1	2609866	g192533	i0	65.2	0.766666667	46	16	76.7	43	180	263	308	138	69.7	1.0	Viruses	Varidnaviria	Bamfordvirae	Preplasmiviricota	Polintoviricetes	Orthopolintovirales	Adintoviridae		Astyanax tetra cavefish adintovirus	Viruses;Varidnaviria;Bamfordvirae;Preplasmiviricota;Polintoviricetes;Orthopolintovirales;Adintoviridae;Astyanax tetra cavefish adintovirus	Astyanax tetra cavefish adintovirus	Viruses	Viruses	69.7	4.33e-12

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;