RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA674308" and tax_phylum = "Kitrinoviricota"

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tax_superkingdom 1

tax_phylum 1

  • Kitrinoviricota · 7 ✖

tax_kingdom 1

bioproject 1

  • PRJNA674308 · 7 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
644772 644772 PRJNA674308_P_NODE_44501_length_165_cov_2.275862_g44266_i0 PRJNA674308 44501 165 2.275862 3.7551723 Norway luteo-like virus 4 2034334 Viruses Viruses 305 9.59e-79   NTclustered gi|1240393784|gb|MF141071.1| 2034334 g44266 i0 100 4 165 0 100 0 1 165 2371 2535 Norway luteo-like virus 4 isolate NOR/S5/Kilen/2014 RNA-dependent RNA-polymerase gene, partial cds blastn 660 305 1 Viruses   Orthornavirae Kitrinoviricota Tolucaviricetes Tolivirales     Norway luteo-like virus 4
10095075 10095075 PRJNA674308_P_NODE_12148_length_275_cov_1.610619_g11913_i0 PRJNA674308 12148 275 1.610619 4.42920225 Tobamovirus 12234 Viruses Viruses 503 5.809999999999998e-138   NTclustered gi|1559989139|gb|MK273185.1| 1761477 g11913 i0 99.636 100 275 1 100 0 1 275 875 601 Tomato brown rugose fruit virus isolate TAN3 RNA-dependent RNA polymerase (RdRp) gene, partial cds blastn 27500 503 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus fructirugosum
14673630 14673630 PRJNA674308_P_NODE_15932_length_243_cov_1.072165_g15697_i0 PRJNA674308 15932 243 1.072165 2.60536095 Tobamovirus fructirugosum 3432872 Viruses Viruses 449 6.65e-122   NTclustered gi|2048770702|gb|MW314091.1| 1761477 g15697 i0 100 100 243 0 100 0 1 243 2894 3136 Tomato brown rugose fruit virus isolate 6189975_2, partial genome blastn 24300 449 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus fructirugosum
17222733 17222733 PRJNA674308_P_NODE_22314_length_210_cov_1.291925_g22079_i0 PRJNA674308 22314 210 1.291925 2.7130425 Norway luteo-like virus 4 2034334 Viruses Viruses 388 1.24e-103   NTclustered gi|1240393781|gb|MF141070.1| 2034334 g22079 i0 100 3.00952380952381 210 0 100 0 1 210 3777 3568 Norway luteo-like virus 4 isolate NOR/B1V/Tofte/2014 RNA-dependent RNA-polymerase and coat protein genes, complete cds blastn 632 388 1 Viruses   Orthornavirae Kitrinoviricota Tolucaviricetes Tolivirales     Norway luteo-like virus 4
21047235 21047235 PRJNA674308_P_NODE_29277_length_186_cov_1.992701_g29042_i0 PRJNA674308 29277 186 1.992701 3.70642386 Tobamovirus mititessellati 3432879 Viruses Viruses 333 5.069999999999999e-87   NTclustered gi|443385357|gb|JX534224.2| 12241 g29042 i0 98.925 48.1344086021505 186 2 100 0 1 186 3240 3425 Tobacco mild green mosaic virus isolate Xiamen, complete genome blastn 8953 333 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus mititessellati
22322068 22322068 PRJNA674308_P_NODE_34738_length_172_cov_1.000000_g34503_i0 PRJNA674308 34738 172 1 1.72 Tobamovirus tabaci 3432891 Viruses Viruses 259 7.92e-65   NTclustered gi|2874131729|dbj|LC612823.1| 12242 g34503 i0 93.714 101.575581395349 175 8 100 2 1 172 5913 6087 Tobacco mosaic virus Jiou genomic RNA, complete genome blastn 17471 259 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus tabaci
25393137 25393137 PRJNA674308_P_NODE_44120_length_166_cov_0.888889_g43885_i0 PRJNA674308 44120 166 0.888889 1.47555574 Tobamovirus 12234 Viruses Viruses 307 2.69e-79   NTclustered gi|2837380181|gb|PP099897.1| 1761477 g43885 i0 100 100 166 0 100 0 1 166 4061 3896 Tomato brown rugose fruit virus isolate NPPO-NL 36648757, complete genome blastn 16600 307 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus fructirugosum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;