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contig_metadata

32 rows where bioproject = "PRJNA674308" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 32 ✖

bioproject 1

  • PRJNA674308 · 32 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
644857 644857 PRJNA674308_P_NODE_53621_length_162_cov_0.920354_g53386_i0 PRJNA674308 53621 162 0.920354 1.49097348 Candidatus Southlakia epibionticum 3043284 Bacteria Bacteria 213 5.84e-51   NTclustered gi|2516687873|gb|CP124550.1| 3043284 g53386 i0 90.303 1.01851851851852 165 13 100 1 1 162 464384 464548 Candidatus Southlakia epibionticum strain ML1 chromosome, complete genome blastn 165 213 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Saccharimonadales Candidatus Saccharimonadaceae Candidatus Southlakia Candidatus Southlakia epibionticum
4472614 4472614 PRJNA674308_P_NODE_17804_length_231_cov_1.384615_g17569_i0 PRJNA674308 17804 231 1.384615 3.19846065 Candidatus Saccharibacteria bacterium oral taxon 955 2572087 Bacteria Bacteria 379 8.339999999999999e-101   NTclustered gi|1663049602|gb|CP040008.1| 2572087 g17569 i0 96.507 248.38961038961 229 8 99 0 1 229 138930 139158 Candidatus Saccharibacteria bacterium oral taxon 955 strain PM004 chromosome, complete genome blastn 57378 379 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharibacteria bacterium oral taxon 955
4472802 4472802 PRJNA674308_P_NODE_41584_length_167_cov_0.881356_g41349_i0 PRJNA674308 41584 167 0.881356 1.47186452 Candidatus Minimicrobia vallesae 2841264 Bacteria Bacteria 276 7.64e-70   NTclustered gi|2052594292|gb|CP076459.1| 2841264 g41349 i0 96.407 14.4131736526946 167 6 100 0 1 167 26607 26773 Candidatus Minimicrobia vallesae isolate IHU2 chromosome, complete genome blastn 2407 276 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota       Candidatus Minimicrobia Candidatus Minimicrobia vallesae
4994831 4994831 PRJNA674308_P_NODE_27244_length_192_cov_1.706294_g27009_i0 PRJNA674308 27244 192 1.706294 3.27608448 Candidatus Nanosynbacter 2093823 Bacteria Bacteria 355 1.13e-93   NTclustered gi|2179907571|gb|CP090820.1| 2933970 g27009 i0 100 53.140625 192 0 100 0 1 192 137847 137656 MAG: Candidatus Nanosynbacter sp. HMT-348_TM7c-JB isolate JCVI_32_bin.19 chromosome, complete genome blastn 10203 355 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Nanosynbacterales Candidatus Nanosynbacteraceae Candidatus Nanosynbacter Candidatus Nanosynbacter sp. HMT-348_TM7c-JB
12124149 12124149 PRJNA674308_P_NODE_43390_length_166_cov_0.888889_g43155_i0 PRJNA674308 43390 166 0.888889 1.47555574 Candidatus Nanosynbacter sp. HMT-348_TM7c-JB 2933970 Bacteria Bacteria 244 2.1399999999999998e-60   NTclustered gi|2179907571|gb|CP090820.1| 2933970 g43155 i0 93.373 1 166 10 100 1 1 166 547732 547896 MAG: Candidatus Nanosynbacter sp. HMT-348_TM7c-JB isolate JCVI_32_bin.19 chromosome, complete genome blastn 166 244 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Nanosynbacterales Candidatus Nanosynbacteraceae Candidatus Nanosynbacter Candidatus Nanosynbacter sp. HMT-348_TM7c-JB
12124169 12124169 PRJNA674308_P_NODE_46070_length_165_cov_0.896552_g45835_i0 PRJNA674308 46070 165 0.896552 1.4793108 Candidatus Nanosynbacter sp. HMT-348_TM7c-JB 2933970 Bacteria Bacteria 283 4.4899999999999995e-72   NTclustered gi|2179907571|gb|CP090820.1| 2933970 g45835 i0 97.576 1 165 4 100 0 1 165 519272 519436 MAG: Candidatus Nanosynbacter sp. HMT-348_TM7c-JB isolate JCVI_32_bin.19 chromosome, complete genome blastn 165 283 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Nanosynbacterales Candidatus Nanosynbacteraceae Candidatus Nanosynbacter Candidatus Nanosynbacter sp. HMT-348_TM7c-JB
15195089 15195089 PRJNA674308_P_NODE_26032_length_196_cov_1.816327_g25797_i0 PRJNA674308 26032 196 1.816327 3.56000092 Candidatus Nanosynbacteraceae 2093822 Bacteria Bacteria 313 7.04e-81   NTclustered gi|2306607015|emb|OX335598.1| 2026720 g25797 i0 95.408 214.112244897959 196 9 100 0 1 196 79852 79657 Candidatus Saccharibacteria bacterium isolate PRJEB56001 genome assembly, chromosome: contig00001 blastn 41966 313 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium
22321905 22321905 PRJNA674308_P_NODE_14918_length_250_cov_1.552239_g14683_i0 PRJNA674308 14918 250 1.552239 3.8805975 Patescibacteria group bacterium 2052139 Bacteria Bacteria 162 9.09e-45   NR MCL4419562.1 2052139 g14683 i0 97.6 0.984 82 2 98.4 0 3 248 239 320 MCL4419562.1 AAA family ATPase [Patescibacteria group bacterium] diamond 246 162 1 Bacteria Bacteria candidate phyla             Patescibacteria group bacterium
25393208 25393208 PRJNA674308_P_NODE_5620_length_400_cov_2.957265_g5385_i0 PRJNA674308 5620 400 2.957265 11.82906 Candidatus Calescibacterium sp. 2972667 Bacteria Bacteria 130 1.1499999999999999e-32   NR MCS7213355.1 2972667 g5385 i0 64.6 12.7275 99 34 74.3 1 3 299 89 186 MCS7213355.1 F0F1 ATP synthase subunit alpha [Candidatus Calescibacterium sp.] diamond 5091 130 1 Bacteria Bacteria candidate phyla   Candidatus Calescibacteriota       Candidatus Calescibacterium Candidatus Calescibacterium sp.
26955036 26955036 PRJNA674308_P_NODE_11242_length_285_cov_1.542373_g11007_i0 PRJNA674308 11242 285 1.542373 4.39576305 candidate division WWE3 bacterium CSP1-7 1576480 Bacteria Bacteria 48.9 2.86e-5   NR KRT67739.1 1576480 g11007 i0 52.3 0.894736842105263 44 21 46.3 0 42 173 15 58 KRT67739.1 MAG: Uncharacterized protein XU08_C0001G0148 [candidate division WWE3 bacterium CSP1-7] diamond 255 48.9 1 Bacteria Bacteria candidate phyla   candidate division WWE3         candidate division WWE3 bacterium CSP1-7
26955042 26955042 PRJNA674308_P_NODE_18182_length_229_cov_1.155556_g17947_i0 PRJNA674308 18182 229 1.155556 2.64622324 Patescibacteria group bacterium 2052139 Bacteria Bacteria 140 2.26e-37   NR MCL4419561.1 2052139 g17947 i0 89.5 0.995633187772926 76 8 99.6 0 1 228 280 355 MCL4419561.1 dynein heavy chain domain-containing protein [Patescibacteria group bacterium] diamond 228 140 1 Bacteria Bacteria candidate phyla             Patescibacteria group bacterium
27050261 27050261 PRJNA674308_P_NODE_11962_length_277_cov_1.368421_g11727_i0 PRJNA674308 11962 277 1.368421 3.79052617 Parcubacteria group bacterium 2 2026774 Bacteria Bacteria 89.4 7.93e-19   NR OYV27687.1 1970247 g11727 i0 60.6 0.768953068592058 71 28 76.9 0 275 63 266 336 OYV27687.1 MAG: hypothetical protein B7W98_01270 [Parcubacteria group bacterium 20-58-5] diamond 213 89.4 1 Bacteria Bacteria candidate phyla             Parcubacteria group bacterium 20-58-5
27271439 27271439 PRJNA674308_P_NODE_38923_length_168_cov_0.873950_g38688_i0 PRJNA674308 38923 168 0.87395 1.468236 Candidatus Nomurabacteria bacterium 2052152 Bacteria Bacteria 77 1.09e-14   NR USN96648.1 2052152 g38688 i0 63.5 0.928571428571429 52 19 92.9 0 160 5 1087 1138 USN96648.1 MAG: hypothetical protein H6797_00385 [Candidatus Nomurabacteria bacterium] diamond 156 77 1 Bacteria Bacteria candidate phyla   Candidatus Nomuraibacteriota         Candidatus Nomurabacteria bacterium
27618996 27618996 PRJNA674308_P_NODE_32024_length_179_cov_1.200000_g31789_i0 PRJNA674308 32024 179 1.2 2.148 Candidatus Staskawiczbacteria bacterium RIFCSPHIGHO2_ 2053617 Bacteria Bacteria 56.6 8.55e-8   NR OGZ62446.1 1802199 g31789 i0 52.1 5.94972067039106 48 23 80.4 0 145 2 2 49 OGZ62446.1 MAG: hypothetical protein A2639_01270 [Candidatus Staskawiczbacteria bacterium RIFCSPHIGHO2_01_FULL_34_27] diamond 1065 56.6 1 Bacteria Bacteria candidate phyla   Candidatus Staskawicziibacteriota         Candidatus Staskawiczbacteria bacterium RIFCSPHIGHO2_01_FULL_34_27
27808560 27808560 PRJNA674308_P_NODE_3804_length_492_cov_1.214447_g3570_i0 PRJNA674308 3804 492 1.214447 5.97507924 Candidatus Eiseniibacteriota bacterium 2212470 Bacteria Bacteria 144 8.44e-40   NR MBI5167934.1 2212470 g3570 i0 54.4 1.95121951219512 160 70 97.6 2 6 485 42 198 MBI5167934.1 DUF4397 domain-containing protein [Candidatus Eiseniibacteriota bacterium] diamond 960 144 1 Bacteria Bacteria candidate phyla   Candidatus Eiseniibacteriota         Candidatus Eiseniibacteriota bacterium
28155791 28155791 PRJNA674308_P_NODE_1245_length_898_cov_3.468787_g1075_i0 PRJNA674308 1245 898 3.468787 31.14970726 Candidatus Binataceae bacterium 2785449 Bacteria Bacteria 215 1.3800000000000002e-64   NR HKN02187.1 2785449 g1075 i0 46.2 1.75389755011136 262 119 87.5 6 7 792 53 292 HKN02187.1 alpha/beta hydrolase [Candidatus Binataceae bacterium] diamond 1575 215 1 Bacteria Bacteria candidate phyla   Candidatus Binatota Candidatus Binatia Candidatus Binatales Candidatus Binataceae   Candidatus Binataceae bacterium
28502980 28502980 PRJNA674308_P_NODE_35087_length_171_cov_1.278689_g34852_i0 PRJNA674308 35087 171 1.278689 2.18655819 Candidatus Liptonbacteria bacterium 2528273 Bacteria Bacteria 54.7 8.42e-7   NR MDO8664041.1 2528273 g34852 i0 46.3 0.947368421052632 54 29 94.7 0 170 9 574 627 MDO8664041.1 polyribonucleotide nucleotidyltransferase [Candidatus Liptonbacteria bacterium] diamond 162 54.7 1 Bacteria Bacteria candidate phyla   Candidatus Liptoniibacteriota         Candidatus Liptonbacteria bacterium
28881736 28881736 PRJNA674308_P_NODE_11848_length_278_cov_1.462882_g11613_i0 PRJNA674308 11848 278 1.462882 4.06681196 Candidatus Babeliales bacterium 2803731 Bacteria Bacteria 48.1 7.03e-4   NR MDR3549977.1 2803731 g11613 i0 33.7 0.89568345323741 83 52 88.5 3 32 277 248 328 MDR3549977.1 ankyrin repeat domain-containing protein [Candidatus Babeliales bacterium] diamond 249 48.1 1 Bacteria Bacteria candidate phyla     Candidatus Babeliae Candidatus Babeliales     Candidatus Babeliales bacterium
28957102 28957102 PRJNA674308_P_NODE_14068_length_257_cov_1.072115_g13833_i0 PRJNA674308 14068 257 1.072115 2.75533555 root 1 Root_unresolved Root_unresolved 94.4 2.5e-20   NR OGY87099.1 1798547 g13833 i0 55.6 6.66536964980545 81 36 94.6 0 256 14 13 93 OGY87099.1 MAG: hypothetical protein A2319_02750 [Candidatus Kerfeldbacteria bacterium RIFOXYB2_FULL_38_14] diamond 1713 95.1 0.992639327024185 Bacteria Bacteria candidate phyla   Candidatus Kerfeldiibacteriota         Candidatus Kerfeldbacteria bacterium RIFOXYB2_FULL_38_14
28976691 28976691 PRJNA674308_P_NODE_17628_length_232_cov_1.136612_g17393_i0 PRJNA674308 17628 232 1.136612 2.63693984 Patescibacteria group bacterium 2052139 Bacteria Bacteria 78.2 8.48e-16   NR MCL4419857.1 2052139 g17393 i0 53.2 0.995689655172414 77 36 99.6 0 232 2 55 131 MCL4419857.1 KTI12 family protein [Patescibacteria group bacterium] diamond 231 78.2 1 Bacteria Bacteria candidate phyla             Patescibacteria group bacterium
29797337 29797337 PRJNA674308_P_NODE_2131_length_680_cov_3.397781_g1919_i0 PRJNA674308 2131 680 3.397781 23.1049108 Patescibacteria group bacterium 2052139 Bacteria Bacteria 337 2.0899999999999995e-112   NR MCL4419852.1 2052139 g1919 i0 79.6 0.930882352941176 211 43 93.1 0 678 46 191 401 MCL4419852.1 CoA-acylating methylmalonate-semialdehyde dehydrogenase [Patescibacteria group bacterium] diamond 633 337 1 Bacteria Bacteria candidate phyla             Patescibacteria group bacterium
30176479 30176479 PRJNA674308_P_NODE_28172_length_190_cov_0.943262_g27937_i0 PRJNA674308 28172 190 0.943262 1.7921978 Candidatus Babelota bacterium 2030827 Bacteria Bacteria 49.7 5.87e-5   NR MBU1008254.1 2030827 g27937 i0 41.1 0.884210526315789 56 33 88.4 0 13 180 34 89 MBU1008254.1 hypothetical protein [Candidatus Dependentiae bacterium] diamond 168 49.7 1 Bacteria Bacteria candidate phyla             Candidatus Babelota bacterium
30398230 30398230 PRJNA674308_P_NODE_28933_length_187_cov_2.260870_g28698_i0 PRJNA674308 28933 187 2.26087 4.2278269 Candidatus Parcubacteria bacterium 2762014 Bacteria Bacteria 63.2 3.54e-10   NR PLX25917.1 2762014 g28698 i0 53.3 1.84491978609626 60 28 96.3 0 182 3 116 175 PLX25917.1 MAG: NAD(P)H-dependent oxidoreductase [Candidatus Parcubacteria bacterium] diamond 345 63.2 1 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria         Candidatus Parcubacteria bacterium
31535758 31535758 PRJNA674308_P_NODE_26636_length_194_cov_1.496552_g26401_i0 PRJNA674308 26636 194 1.496552 2.90331088 Candidatus Binatia bacterium 2838779 Bacteria Bacteria 74.3 2.32e-14   NR HUE38689.1 2838779 g26401 i0 56.3 1.9639175257732 64 28 99 0 194 3 73 136 HUE38689.1 hypothetical protein [Candidatus Binatia bacterium] diamond 381 74.3 1 Bacteria Bacteria candidate phyla   Candidatus Binatota Candidatus Binatia       Candidatus Binatia bacterium
31630396 31630396 PRJNA674308_P_NODE_12676_length_269_cov_1.890909_g12441_i0 PRJNA674308 12676 269 1.890909 5.08654521 Patescibacteria group bacterium 2052139 Bacteria Bacteria 73.9 3.27e-13   NR MCL4419288.1 2052139 g12441 i0 52.2 0.747211895910781 67 30 72.5 1 269 75 258 324 MCL4419288.1 hypothetical protein [Patescibacteria group bacterium] diamond 201 73.9 1 Bacteria Bacteria candidate phyla             Patescibacteria group bacterium
31978296 31978296 PRJNA674308_P_NODE_15318_length_247_cov_1.454545_g15083_i0 PRJNA674308 15318 247 1.454545 3.59272615 Candidatus Firestoneibacteriota bacterium 2715505 Bacteria Bacteria 43.9 0.0151   NR MBI5207974.1 2715505 g15083 i0 36.7 0.595141700404858 49 31 59.5 0 176 30 675 723 MBI5207974.1 tetratricopeptide repeat protein [Candidatus Firestonebacteria bacterium] diamond 147 43.9 1 Bacteria Bacteria candidate phyla   Candidatus Firestoneibacteriota         Candidatus Firestoneibacteriota bacterium
32104886 32104886 PRJNA674308_P_NODE_16318_length_240_cov_1.596859_g16083_i0 PRJNA674308 16318 240 1.596859 3.8324616 Sumerlaeia bacterium 3066091 Bacteria Bacteria 97.4 1.86e-21   NR MEQ8820598.1 3066091 g16083 i0 54.7 3.35 75 30 93.8 1 2 226 486 556 MEQ8820598.1 energy-dependent translational throttle protein EttA [Sumerlaeia bacterium] diamond 804 97.4 1 Bacteria Bacteria candidate phyla   Candidatus Sumerlaeota Candidatus Sumerlaeia       Sumerlaeia bacterium
32326855 32326855 PRJNA674308_P_NODE_719_length_1164_cov_22.451121_g608_i0 PRJNA674308 719 1164 22.451121 261.33104844 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 138 3.6599999999999995e-35   NR MCT4592035.1 2044595 g608 i0 42.1 0.40979381443299 159 89 41 2 1035 559 4 159 MCT4592035.1 NAD(P)H-dependent oxidoreductase [Candidatus Altimarinota bacterium] diamond 477 138 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
32358375 32358375 PRJNA674308_P_NODE_9499_length_309_cov_1.030769_g9264_i0 PRJNA674308 9499 309 1.030769 3.18507621 Candidatus Methylomirabilota bacterium 2072417 Bacteria Bacteria 90.1 7.42e-19   NR HVG81482.1 2072417 g9264 i0 47.4 0.941747572815534 97 42 94.2 2 309 19 249 336 HVG81482.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD [Candidatus Methylomirabilota bacterium] diamond 291 90.1 1 Bacteria Bacteria candidate phyla   Candidatus Methylomirabilota         Candidatus Methylomirabilota bacterium
32579685 32579685 PRJNA674308_P_NODE_32019_length_179_cov_1.200000_g31784_i0 PRJNA674308 32019 179 1.2 2.148 Candidatus Roizmanbacteria bacterium 2282149 Bacteria Bacteria 59.7 1.39e-8   NR MFS8159476.1 2282149 g31784 i0 45.5 0.921787709497207 55 30 92.2 0 15 179 126 180 MFS8159476.1 hypothetical protein [Candidatus Roizmanbacteria bacterium] diamond 165 59.7 1 Bacteria Bacteria candidate phyla   Candidatus Roizmaniibacteriota         Candidatus Roizmanbacteria bacterium
32611013 32611013 PRJNA674308_P_NODE_53840_length_162_cov_0.920354_g53605_i0 PRJNA674308 53840 162 0.920354 1.49097348 Candidatus Saccharimonas sp. 1917697 Bacteria Bacteria 111 2.52e-28   NR RKW03827.1 1917697 g53605 i0 100 1.96296296296296 53 0 98.1 0 161 3 158 210 RKW03827.1 MAG: serine--tRNA ligase, partial [Candidatus Saccharimonas sp.] diamond 318 111 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Saccharimonadales Candidatus Saccharimonadaceae Candidatus Saccharimonas Candidatus Saccharimonas sp.
32811726 32811726 PRJNA674308_P_NODE_10720_length_292_cov_1.185185_g10485_i0 PRJNA674308 10720 292 1.185185 3.4607402 Pseudomonadati 3379134 Bacteria Bacteria 45.1 0.0102   NR KKT54442.1 1618930 g10485 i0 47.8 1.37671232876712 46 24 47.3 0 288 151 508 553 KKT54442.1 MAG: AMP-dependent synthetase and ligase [Parcubacteria group bacterium GW2011_GWC2_44_22] diamond 402 45.1 1 Bacteria Bacteria candidate phyla             Parcubacteria group bacterium GW2011_GWC2_44_22

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;