RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA459724" and tax_phylum = "Mollusca"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mollusca · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA459724 · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1717934 1717934 PRJNA459724_S_NODE_562_length_226_cov_5.952880_g559_i0 PRJNA459724 562 226 5.95288 13.4535088 Mercenaria mercenaria 6596 Mollusca Mollusca 110 1.18e-19   NTclustered gi|2441993380|ref|XM_053520321.1| 6596 g559 i0 88.043 2.46902654867257 92 11 41 0 125 216 407 316 PREDICTED: Mercenaria mercenaria histone H4-like (LOC128547447), mRNA blastn 558 110 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Venerida Veneridae Mercenaria Mercenaria mercenaria
2369358 2369358 PRJNA459724_S_NODE_1182_length_193_cov_2.563291_g1179_i0 PRJNA459724 1182 193 2.563291 4.94715163 Haliotis 6452 Mollusca Mollusca 71.3 4.59e-8   NTclustered gi|2245697914|ref|XM_046483411.2| 6454 g1179 i0 92 2.11917098445596 50 4 26 0 18 67 772 821 PREDICTED: Haliotis rufescens 60S ribosomal protein L8 (LOC124120553), mRNA blastn 409 71.3 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Lepetellida Haliotidae Haliotis Haliotis rufescens
30960948 30960948 PRJNA459724_S_NODE_794_length_212_cov_2.112994_g791_i0 PRJNA459724 794 212 2.112994 4.47954728 Ylistrum balloti 509963 Mollusca Mollusca 42.4 0.0316   NR XP_060067372.1 509963 g791 i0 34.9 0.608490566037736 43 28 60.8 0 14 142 211 253 XP_060067372.1 large ribosomal subunit protein uL16m-like [Ylistrum balloti] diamond 129 42.4 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Pectinida Pectinidae Ylistrum Ylistrum balloti
31166289 31166289 PRJNA459724_S_NODE_755_length_214_cov_10.374302_g752_i0 PRJNA459724 755 214 10.374302 22.20100628 Opisthokonta 33154 Mollusca Mollusca 58.9 3.03e-9   NR XP_052777321.1 6604 g752 i0 87.5 7.4018691588785 32 4 44.9 0 3 98 48 79 XP_052777321.1 probable 60S ribosomal protein L37-A [Mya arenaria] diamond 1584 59.3 0.993254637436762 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Myida Myidae Mya Mya arenaria
31687979 31687979 PRJNA459724_S_NODE_1997_length_168_cov_6.308271_g1994_i0 PRJNA459724 1997 168 6.308271 10.59789528 Crassostrea virginica 6565 Mollusca Mollusca 48.9 8.4e-5   NR XP_022313684.1 6565 g1994 i0 47.5 0.714285714285714 40 21 71.4 0 168 49 226 265 XP_022313684.1 elongation of very long chain fatty acids protein 4-like [Crassostrea virginica] diamond 120 48.9 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Ostreida Ostreidae Crassostrea Crassostrea virginica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;