RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA459724" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 2 ✖

bioproject 1

  • PRJNA459724 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9370834 9370834 PRJNA459724_P_NODE_1808_length_411_cov_3.075916_g1436_i0 PRJNA459724 1808 411 3.075916 12.64201476 Dictyostelium discoideum 44689 Evosea other_Eukaryota 52.8 0.039   NTclustered gi|66816568|ref|XM_637202.1| 352472 g1436 i0 100 0.0681265206812652 28 0 7 0 272 299 273 246 Dictyostelium discoideum AX4 hypothetical protein (DDB_G0278329) mRNA, complete cds blastn 28 52.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
17671600 17671600 PRJNA459724_S_NODE_274_length_262_cov_9.674009_g271_i0 PRJNA459724 274 262 9.674009 25.34590358 Entamoeba 5758 Evosea other_Eukaryota 60.2 1.43e-4   NTclustered gi|167379942|ref|XM_001735280.1| 370354 g271 i0 97.143 0.396946564885496 35 1 13 0 46 80 1971 1937 Entamoeba dispar SAW760 heat shock cognate 71 kDa protein, putative (EDI_315850), partial mRNA blastn 104 60.2 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba dispar

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;