RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1218818" and tax_phylum = "Bacillariophyta"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1218818 · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12524991 12524991 PRJNA1218818_P_NODE_12830_length_343_cov_1.829630_g12763_i0 PRJNA1218818 12830 343 1.82963 6.2756309 Thalassiosira 35127 SAR_Eukaryotes SAR_Eukaryotes 634 2.5299999999999996e-177   NTclustered gi|343129395|gb|HM991684.1| 265564 g12763 i0 100 99.8046647230321 343 0 100 0 1 343 183 525 Thalassiosira punctigera 28S ribosomal RNA gene, partial sequence blastn 34233 634 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Thalassiosirales Thalassiosiraceae Thalassiosira Thalassiosira punctigera
32095813 32095813 PRJNA1218818_P_NODE_26458_length_246_cov_0.890173_g26391_i0 PRJNA1218818 26458 246 0.890173 2.18982558 Fragilaria crotonensis 210448 SAR_Eukaryotes SAR_Eukaryotes 170 2.54e-48   NR KAI2511153.1 210448 g26391 i0 88.8 0.975609756097561 80 9 97.6 0 240 1 348 427 KAI2511153.1 DNA photolyase [Fragilaria crotonensis] diamond 240 170 1 Eukaryota Sar   Bacillariophyta Fragilariophyceae Fragilariales Fragilariaceae Fragilaria Fragilaria crotonensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;