RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1218818" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1218818 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27452161 27452161 PRJNA1218818_P_NODE_23443_length_255_cov_1.681319_g23376_i0 PRJNA1218818 23443 255 1.681319 4.28736345 Cyclospora cayetanensis 88456 SAR_Eukaryotes SAR_Eukaryotes 118 5.6e-31   NR OEH76901.1 88456 g23376 i0 68.2 8 85 27 100 0 255 1 34 118 OEH76901.1 ribosomal protein rpl19 [Cyclospora cayetanensis] diamond 2040 118 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Cyclospora Cyclospora cayetanensis
28304390 28304390 PRJNA1218818_P_NODE_22106_length_264_cov_1.612565_g22039_i0 PRJNA1218818 22106 264 1.612565 4.2571716 Cardiosporidium cionae 476202 SAR_Eukaryotes SAR_Eukaryotes 75.9 3.48e-14   NR KAF8819287.1 476202 g22039 i0 39.3 1.90909090909091 84 51 95.5 0 260 9 134 217 KAF8819287.1 ribosomal protein RPP0 [Cardiosporidium cionae] diamond 504 75.9 1 Eukaryota Sar   Apicomplexa Aconoidasida Nephromycida   Cardiosporidium Cardiosporidium cionae
31811139 31811139 PRJNA1218818_P_NODE_16357_length_308_cov_0.982979_g16290_i0 PRJNA1218818 16357 308 0.982979 3.02757532 Babesia duncani 323732 SAR_Eukaryotes SAR_Eukaryotes 144 3.61e-41   NR XP_067804708.1 323732 g16290 i0 68.3 9.88636363636364 101 32 98.4 0 1 303 2 102 XP_067804708.1 bifunctional Ribosomal protein S8e/Ribosomal protein S8e [Babesia duncani] diamond 3045 144 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia duncani

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;