RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1218818" and tax_clade = "FCB group"

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analysis 2

tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • FCB group · 6 ✖

bioproject 1

  • PRJNA1218818 · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7987204 7987204 PRJNA1218818_P_NODE_26907_length_245_cov_0.895349_g26840_i0 PRJNA1218818 26907 245 0.895349 2.19360505 Flavobacterium sp. H122 2529860 Bacteria Bacteria 145 3.93e-38   NR WP_136667232.1 2529860 g26840 i0 92.5 1.95918367346939 80 6 98 0 243 4 73 152 WP_136667232.1 carboxypeptidase-like regulatory domain-containing protein [Flavobacterium sp. H122] diamond 480 145 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium sp. H122
9261638 9261638 PRJNA1218818_P_NODE_1348_length_1001_cov_2.010776_g1302_i0 PRJNA1218818 1348 1001 2.010776 20.12786776 Flavobacterium oreochromis 2906078 Bacteria Bacteria 1633 0   NTclustered gi|2079163087|gb|CP067377.1| 2906078 g1302 i0 96.104 555.716283716284 1001 39 100 0 1 1001 3066 4066 Flavobacterium oreochromis strain Costa Rica 04-02-TN chromosome, complete genome blastn 556272 1633 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium oreochromis
16910805 16910805 PRJNA1218818_P_NODE_17954_length_294_cov_1.914027_g17887_i0 PRJNA1218818 17954 294 1.914027 5.62723938 Candidatus Hydrogenedentota bacterium 2030809 Bacteria Bacteria 226 1.52e-54   NTclustered gi|2621786419|emb|OY782877.1| 2030809 g17887 i0 80.612 26.4047619047619 294 56 100 1 1 294 2441891 2441599 MAG: Candidatus Hydrogenedentes bacterium isolate 28e603e2-5466-4732-bb1a-a7370d5bccbd genome assembly, chromosome: 1 blastn 7763 226 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium
25272502 25272502 PRJNA1218818_P_NODE_20220_length_278_cov_0.995122_g20153_i0 PRJNA1218818 20220 278 0.995122 2.76643916 Emticicia 312278 Bacteria Bacteria 431 2.81e-116   NTclustered gi|470489174|ref|NR_076911.1| 312279 g20153 i0 94.604 288.579136690647 278 15 100 0 1 278 308 31 Emticicia oligotrophica strain GPTSA100-15 23S ribosomal RNA gene, complete sequence blastn 80225 431 1 Bacteria FCB group Pseudomonadati Bacteroidota Cytophagia Cytophagales Leadbetterellaceae Emticicia Emticicia oligotrophica
28083332 28083332 PRJNA1218818_P_NODE_24965_length_249_cov_0.875000_g24898_i0 PRJNA1218818 24965 249 0.875 2.17875 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 112 7.53e-29   NR HEX5439172.1 2026741 g24898 i0 73.1 0.939759036144578 78 21 94 0 14 247 57 134 HEX5439172.1 recombinase family protein [Gemmatimonadaceae bacterium] diamond 234 112 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
29883346 29883346 PRJNA1218818_P_NODE_29271_length_234_cov_3.826087_g29204_i0 PRJNA1218818 29271 234 3.826087 8.95304358 Phocaeicola vulgatus 821 Bacteria Bacteria 40 0.0398   NR WP_227238842.1 821 g29204 i0 40 1.02564102564103 40 22 48.7 1 133 20 11 50 WP_227238842.1 hypothetical protein, partial [Phocaeicola vulgatus] diamond 240 40 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Phocaeicola Phocaeicola vulgatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;