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contig_metadata

16 rows where bioproject = "PRJNA1182301" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 16 ✖

tax_clade 1

bioproject 1

  • PRJNA1182301 · 16 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
318493 318493 PRJNA1182301_P_NODE_2901_length_514_cov_3.725624_g2777_i0 PRJNA1182301 2901 514 3.725624 19.14970736 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 904 0   NTclustered gi|166046792|emb|CU367367.1| 100861 g2777 i0 97.674 99.1984435797665 516 10 100 1 1 514 195 710 Aphanomyces euteiches cDNA blastn 50988 904 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
4870011 4870011 PRJNA1182301_P_NODE_7664_length_377_cov_1.578947_g7539_i0 PRJNA1182301 7664 377 1.578947 5.95263019 root 1 Root_unresolved Root_unresolved 573 6.199999999999999e-159   NTclustered gi|166044534|emb|CU367443.1| 100861 g7539 i0 99.681 1.83023872679045 313 1 83 0 1 313 70 382 Aphanomyces euteiches cDNA blastn 690 573 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
5421560 5421560 PRJNA1182301_P_NODE_32145_length_272_cov_1.773869_g32020_i0 PRJNA1182301 32145 272 1.773869 4.82492368 Hyaloperonospora parasitica 123356 SAR_Eukaryotes SAR_Eukaryotes 497 2.67e-136   NTclustered gi|1290336098|gb|MF784706.1| 123356 g32020 i0 99.632 108.360294117647 272 1 100 0 1 272 849 1120 Hyaloperonospora parasitica voucher KUS-F22302 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 29474 497 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Hyaloperonospora Hyaloperonospora parasitica
10521685 10521685 PRJNA1182301_P_NODE_13389_length_313_cov_4.154167_g13264_i0 PRJNA1182301 13389 313 4.154167 13.00254271 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 579 1.0899999999999999e-160   NTclustered gi|166044607|emb|CU367516.1| 100861 g13264 i0 100 32.1182108626198 313 0 100 0 1 313 2 314 Aphanomyces euteiches cDNA blastn 10053 579 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
11797678 11797678 PRJNA1182301_P_NODE_5630_length_415_cov_2.078947_g5505_i0 PRJNA1182301 5630 415 2.078947 8.62763005 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 767 0   NTclustered gi|166044613|emb|CU367522.1| 100861 g5505 i0 100 182.968674698795 415 0 100 0 1 415 459 45 Aphanomyces euteiches cDNA blastn 75932 767 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
13794821 13794821 PRJNA1182301_P_NODE_26311_length_280_cov_1.516908_g26186_i0 PRJNA1182301 26311 280 1.516908 4.2473424 root 1 Root_unresolved Root_unresolved 507 4.58e-139   NTclustered gi|166044538|emb|CU367447.1| 100861 g26186 i0 99.286 113.214285714286 280 2 100 0 1 280 257 536 Aphanomyces euteiches cDNA blastn 31700 507 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
16896503 16896503 PRJNA1182301_P_NODE_6934_length_388_cov_2.841270_g6809_i0 PRJNA1182301 6934 388 2.84127 11.0241276 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 717 0   NTclustered gi|166046682|emb|CU367792.1| 100861 g6809 i0 100 83.8376288659794 388 0 100 0 1 388 540 153 Aphanomyces euteiches cDNA blastn 32529 717 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
18169899 18169899 PRJNA1182301_P_NODE_21835_length_286_cov_1.981221_g21710_i0 PRJNA1182301 21835 286 1.981221 5.66629206 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 529 1e-145   NTclustered gi|166044589|emb|CU367498.1| 100861 g21710 i0 100 100.101398601399 286 0 100 0 1 286 371 86 Aphanomyces euteiches cDNA blastn 28629 529 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
18893186 18893186 PRJNA1182301_P_NODE_47935_length_251_cov_3.252809_g47810_i0 PRJNA1182301 47935 251 3.252809 8.16455059 root 1 Root_unresolved Root_unresolved 414 2.52e-111   NTclustered gi|166046495|emb|CU367612.1| 100861 g47810 i0 97.908 3.88446215139442 239 5 95 0 13 251 1 239 Aphanomyces euteiches cDNA blastn 975 418 0.990430622009569 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
20719859 20719859 PRJNA1182301_P_NODE_32877_length_271_cov_1.944444_g32752_i0 PRJNA1182301 32877 271 1.944444 5.26944324 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 337 6.129999999999998e-88   NTclustered gi|166046617|emb|CU367734.1| 100861 g32752 i0 98.429 1.68634686346863 191 3 70 0 2 192 1 191 Aphanomyces euteiches cDNA blastn 457 337 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
21996101 21996101 PRJNA1182301_P_NODE_9478_length_352_cov_1.655914_g9353_i0 PRJNA1182301 9478 352 1.655914 5.82881728 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 651 0   NTclustered gi|166046520|emb|CU367637.1| 100861 g9353 i0 100 30.0710227272727 352 0 100 0 1 352 476 125 Aphanomyces euteiches cDNA blastn 10585 651 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
25267596 25267596 PRJNA1182301_P_NODE_15700_length_307_cov_1.974359_g15575_i0 PRJNA1182301 15700 307 1.974359 6.06128213 root 1 Root_unresolved Root_unresolved 568 2.3e-157   NTclustered gi|166046524|emb|CU367641.1| 100861 g15575 i0 100 41.7459283387622 307 0 100 0 1 307 386 80 Aphanomyces euteiches cDNA blastn 12816 568 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
26616516 26616516 PRJNA1182301_P_NODE_49441_length_250_cov_3.016949_g49316_i0 PRJNA1182301 49441 250 3.016949 7.5423725 Peronosporomycetes 3418804 SAR_Eukaryotes SAR_Eukaryotes 51.2 4.25e-5   NR TYZ69087.1 1485010 g49316 i0 52.6 1.368 38 16 45.6 1 123 10 776 811 TYZ69087.1 hypothetical protein PybrP1_010193, partial [[Pythium] brassicae (nom. inval.)] diamond 342 51.2 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium [Pythium] brassicae (nom. inval.)
32475263 32475263 PRJNA1182301_P_NODE_66839_length_229_cov_3.987179_g66714_i0 PRJNA1182301 66839 229 3.987179 9.13063991 Pythium insidiosum 114742 SAR_Eukaryotes SAR_Eukaryotes 75.1 9.52e-14   NR GLE02111.1 114742 g66714 i0 40.8 1.28384279475983 98 35 98.3 1 225 1 21 118 GLE02111.1 hypothetical protein PINS_up010949 [Pythium insidiosum] diamond 294 75.1 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium insidiosum
32695826 32695826 PRJNA1182301_P_NODE_18740_length_291_cov_1.344037_g18615_i0 PRJNA1182301 18740 291 1.344037 3.91114767 Peronospora effusa 542832 SAR_Eukaryotes SAR_Eukaryotes 180 7.559999999999998e-54   NR RMX62511.1 542832 g18615 i0 91.8 1 97 7 100 1 291 1 166 261 RMX62511.1 hypothetical protein DD238_007997 [Peronospora effusa] diamond 291 180 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora effusa
32714950 32714950 PRJNA1182301_P_NODE_65420_length_235_cov_2.382716_g65295_i0 PRJNA1182301 65420 235 2.382716 5.5993826 Aphanomyces 100860 SAR_Eukaryotes SAR_Eukaryotes 59.3 4.85e-8   NR KAH9115027.1 100861 g65295 i0 62.5 1.22553191489362 48 15 61.3 2 91 234 191 235 KAH9115027.1 hypothetical protein AeMF1_010946 [Aphanomyces euteiches] diamond 288 59.3 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;