RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1182301" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1182301 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27344456 27344456 PRJNA1182301_P_NODE_60763_length_243_cov_0.905882_g60638_i0 PRJNA1182301 60763 243 0.905882 2.20129326 Eukaryota 2759 Fungi Fungi 68.6 1.85e-11   NR KAI9030228.1 82268 g60638 i0 81.1 5.2962962962963 37 7 45.7 0 3 113 262 298 KAI9030228.1 phosphate transport protein [Hyaloraphidium curvatum] diamond 1287 68.6 1 Eukaryota Opisthokonta Fungi Chytridiomycota Monoblepharidomycetes Monoblepharidales   Hyaloraphidium Hyaloraphidium curvatum
32190369 32190369 PRJNA1182301_P_NODE_33798_length_270_cov_1.563452_g33673_i0 PRJNA1182301 33798 270 1.563452 4.2213204 Rhizoclosmatium globosum 329046 Fungi Fungi 43.1 0.0344   NR ORY50952.1 329046 g33673 i0 39.5 0.844444444444444 76 35 75.6 2 238 35 185 257 ORY50952.1 hypothetical protein BCR33DRAFT_498941 [Rhizoclosmatium globosum] diamond 228 43.1 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytriomycetaceae Rhizoclosmatium Rhizoclosmatium globosum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;