RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1182301" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1182301 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28177406 28177406 PRJNA1182301_P_NODE_18586_length_291_cov_1.954128_g18461_i0 PRJNA1182301 18586 291 1.954128 5.68651248 Chlamydiales bacterium 2047757 Bacteria Bacteria 117 3.66e-30   NR MDF2577745.1 2047757 g18461 i0 56.3 0.989690721649485 96 42 99 0 290 3 13 108 MDF2577745.1 N-formylglutamate amidohydrolase [Chlamydiales bacterium] diamond 288 117 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
30388588 30388588 PRJNA1182301_P_NODE_24513_length_282_cov_3.105263_g24388_i0 PRJNA1182301 24513 282 3.105263 8.75684166 Chlamydia psittaci 83554 Bacteria Bacteria 78.2 4e-17   NR EPP28870.1 1112246 g24388 i0 91.7 0.382978723404255 36 3 38.3 0 173 280 1 36 EPP28870.1 hypothetical protein CP082626L3_1395, partial [Chlamydia psittaci 08-2626_L3] diamond 108 78.2 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia psittaci

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;