RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA1182301" and tax_phylum = "Candidatus Altimarinota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Altimarinota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1182301 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29377462 29377462 PRJNA1182301_P_NODE_59069_length_244_cov_0.900585_g58944_i0 PRJNA1182301 59069 244 0.900585 2.1974274 Candidatus Gracilibacteria bacterium GN 2044595 Bacteria Bacteria 154 9.46e-44   NR RAL57711.1 1912928 g58944 i0 100 0.995901639344262 81 0 99.6 0 243 1 111 191 RAL57711.1 hypothetical protein BLD25_02155 [Candidatus Gracilibacteria bacterium GN02-872] diamond 243 154 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Gracilibacteria bacterium GN02-872
30830453 30830453 PRJNA1182301_P_NODE_37234_length_265_cov_2.734375_g37109_i0 PRJNA1182301 37234 265 2.734375 7.24609375 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 146 7.48e-41   NR RKW20197.1 2044595 g37109 i0 94.9 0.883018867924528 78 4 88.3 0 3 236 61 138 RKW20197.1 MAG: DNA-processing protein DprA [Candidatus Altimarinota bacterium] diamond 234 146 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
31462921 31462921 PRJNA1182301_P_NODE_34336_length_269_cov_2.086735_g34211_i0 PRJNA1182301 34336 269 2.086735 5.61331715 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 181 3.089999999999999e-54   NR MDO4874350.1 2044595 g34211 i0 98.9 0.992565055762082 89 1 99.3 0 268 2 197 285 MDO4874350.1 hypothetical protein [Candidatus Altimarinota bacterium] diamond 267 181 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;