RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

25 rows where bioproject = "PRJNA1182301" and tax_kingdom = "Methanobacteriati"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Methanobacteriati · 25 ✖

tax_clade 1

bioproject 1

  • PRJNA1182301 · 25 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
318879 318879 PRJNA1182301_P_NODE_45661_length_254_cov_2.856354_g45536_i0 PRJNA1182301 45661 254 2.856354 7.25513916 Halomicrococcus gelatinilyticus 1702103 Archaea Archaea 287 5.81e-73   NTclustered gi|2270268908|gb|CP100465.1| 1702103 g45536 i0 87.251 94.0826771653543 251 32 99 0 1 251 1692385 1692635 Halomicrococcus gelatinilyticus strain GSLN9 chromosome, complete genome blastn 23897 287 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haladaptataceae Halomicrococcus Halomicrococcus gelatinilyticus
318955 318955 PRJNA1182301_P_NODE_48981_length_251_cov_0.865169_g48856_i0 PRJNA1182301 48981 251 0.865169 2.17157419 Halobellus limi 699433 Archaea Archaea 88.6 3.12e-18   NR SEF66128.1 699433 g48856 i0 54.3 5.84462151394422 81 37 96.8 0 7 249 1465 1545 SEF66128.1 PGF-CTERM protein [Halobellus limi] diamond 1467 88.6 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halobellus Halobellus limi
1593009 1593009 PRJNA1182301_P_NODE_25562_length_281_cov_1.495192_g25437_i0 PRJNA1182301 25562 281 1.495192 4.20148952 Natrinema versiforme 88724 Archaea Archaea 508 1.28e-139   NTclustered gi|1657691899|gb|CP040330.1| 88724 g25437 i0 99.288 86.0640569395018 281 2 100 0 1 281 921428 921708 Natrinema versiforme strain BOL5-4 chromosome, complete genome blastn 24184 508 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natrinema Natrinema versiforme
1593649 1593649 PRJNA1182301_P_NODE_52662_length_248_cov_1.760000_g52537_i0 PRJNA1182301 52662 248 1.76 4.3648 Halosolutus gelatinilyticus 2931975 Archaea Archaea 182 2.74e-41   NTclustered gi|2225350841|gb|CP095491.1| 2931975 g52537 i0 85.549 29.4838709677419 173 25 70 0 1 173 3105684 3105856 Halosolutus gelatinilyticus strain SQT-29-1 chromosome, complete genome blastn 7312 182 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Halosolutus Halosolutus gelatinilyticus
1593884 1593884 PRJNA1182301_P_NODE_62762_length_241_cov_1.827381_g62637_i0 PRJNA1182301 62762 241 1.827381 4.40398821 Halanaeroarchaeum sulfurireducens 1604004 Archaea Archaea 267 7.12e-67   NTclustered gi|933677909|gb|CP011564.1| 1604004 g62637 i0 87.179 71.0373443983403 234 30 97 0 8 241 1393986 1393753 Halanaeroarchaeum sulfurireducens strain M27-SA2, complete genome blastn 17120 267 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halobacteriaceae Halanaeroarchaeum Halanaeroarchaeum sulfurireducens
2869691 2869691 PRJNA1182301_P_NODE_49043_length_251_cov_0.865169_g48918_i0 PRJNA1182301 49043 251 0.865169 2.17157419 Halanaeroarchaeum sp. HSR-CO 2866382 Archaea Archaea 144 4.32e-41   NR WP_259518466.1 2866382 g48918 i0 80.7 0.99203187250996006 83 16 99.2 0 250 2 3 85 WP_259518466.1 energy-coupling factor ABC transporter ATP-binding protein [Halanaeroarchaeum sp. HSR-CO] diamond 249 144 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halobacteriaceae Halanaeroarchaeum Halanaeroarchaeum sp. HSR-CO
2869779 2869779 PRJNA1182301_P_NODE_53003_length_248_cov_1.348571_g52878_i0 PRJNA1182301 53003 248 1.348571 3.34445608 Natronobeatus ordinarius 2963433 Archaea Archaea 261 3.42e-65   NTclustered gi|2274417427|gb|CP101456.1| 2963433 g52878 i0 86.25 10.5564516129032 240 33 97 0 1 240 1402179 1401940 Natronobeatus ordinarius strain WLHSJ27 chromosome, complete genome blastn 2618 261 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natronobeatus Natronobeatus ordinarius
4145155 4145155 PRJNA1182301_P_NODE_21844_length_286_cov_1.953052_g21719_i0 PRJNA1182301 21844 286 1.953052 5.58572872 Halobacteriales archaeon 1904752 Archaea Archaea 108 9.25e-26   NR HKJ57889.1 1904752 g21719 i0 58.5 0.986013986013986 94 39 98.6 0 2 283 163 256 HKJ57889.1 polymer-forming cytoskeletal protein [Halobacteriales archaeon] diamond 282 108 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales     Halobacteriales archaeon
4146115 4146115 PRJNA1182301_P_NODE_63264_length_241_cov_0.916667_g63139_i0 PRJNA1182301 63264 241 0.916667 2.20916747 Haloarcula halophila 3032584 Archaea Archaea 97.1 9.88e-16   NTclustered gi|2461916621|gb|CP119559.1| 3032584 g63139 i0 87.209 0.356846473029046 86 10 35 1 16 100 2335881 2335796 Haloarcula halophila strain DFY41 chromosome, complete genome blastn 86 97.1 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Haloarcula Haloarcula halophila
5422126 5422126 PRJNA1182301_P_NODE_54545_length_247_cov_0.885057_g54420_i0 PRJNA1182301 54545 247 0.885057 2.18609079 Halobacterium litoreum 2039234 Archaea Archaea 316 7.17e-82   NTclustered gi|2168234898|gb|CP089466.1| 2039234 g54420 i0 91.667 36.3886639676113 228 19 92 0 20 247 572430 572657 Halobacterium litoreum strain ZS-54-S2 chromosome, complete genome blastn 8988 316 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halobacteriaceae Halobacterium Halobacterium litoreum
9245960 9245960 PRJNA1182301_P_NODE_14868_length_310_cov_2.713080_g14743_i0 PRJNA1182301 14868 310 2.71308 8.410548 Halalkalicoccus jeotgali 413810 Archaea Archaea 169 2.7599999999999997e-37   NTclustered gi|299126090|gb|CP002063.1| 795797 g14743 i0 90.551 1.22258064516129 127 12 41 0 1 127 3110 3236 Halalkalicoccus jeotgali B3 plasmid 1, complete sequence blastn 379 169 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halalkalicoccus Halalkalicoccus jeotgali
15069615 15069615 PRJNA1182301_P_NODE_67732_length_226_cov_2.588235_g67607_i0 PRJNA1182301 67732 226 2.588235 5.8494111 Halobacteriales 2235 Archaea Archaea 69.4 2e-7   NTclustered gi|2221492587|gb|CP095006.1| 179637 g67607 i0 93.478 0.880530973451327 46 3 20 0 2 47 200242 200287 Halococcus dombrowskii strain H4 plasmid unnamed1, complete sequence blastn 199 69.4 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halococcus Halococcus dombrowskii
23270569 23270569 PRJNA1182301_P_NODE_28039_length_278_cov_1.195122_g27914_i0 PRJNA1182301 28039 278 1.195122 3.32243916 Halorarum salinum 2743089 Archaea Archaea 143 1.48e-29   NTclustered gi|1868921854|gb|CP058579.1| 2743089 g27914 i0 76.491 2.23741007194245 285 53 100 12 1 278 526959 527236 Halorarum salinum strain NJ-3-1 chromosome, complete genome blastn 622 143 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorarum Halorarum salinum
24544635 24544635 PRJNA1182301_P_NODE_38300_length_264_cov_1.612565_g38175_i0 PRJNA1182301 38300 264 1.612565 4.2571716 Natronomonas sp. LN261 2750669 Archaea Archaea 155 8.61e-42   NR WP_181692425.1 2750669 g38175 i0 93.2 1 88 6 100 0 1 264 517 604 WP_181692425.1 thioredoxin domain-containing protein [Natronomonas sp. LN261] diamond 264 155 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natronomonadaceae Natronomonas Natronomonas sp. LN261
24545025 24545025 PRJNA1182301_P_NODE_54940_length_247_cov_0.885057_g54815_i0 PRJNA1182301 54940 247 0.885057 2.18609079 Halobellus limi 699433 Archaea Archaea 54.7 0.006   NTclustered gi|1621075116|gb|CP031311.1| 699433 g54815 i0 100 0.117408906882591 29 0 12 0 79 107 2657109 2657137 Halobellus limi strain CGMCC 1.10331 chromosome, complete genome blastn 29 54.7 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halobellus Halobellus limi
26723571 26723571 PRJNA1182301_P_NODE_34881_length_268_cov_3.333333_g34756_i0 PRJNA1182301 34881 268 3.333333 8.93333244 Candidatus Nanohaloarchaea archaeon 2594798 Archaea Archaea 54.3 2.41e-7   NR MFB6203425.1 2594798 g34756 i0 43.5 0.694029850746269 62 35 69.4 0 23 208 15 76 MFB6203425.1 histone [Candidatus Nanohaloarchaea archaeon] diamond 186 54.3 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Candidatus Nanohaloarchaea       Candidatus Nanohaloarchaea archaeon
26755507 26755507 PRJNA1182301_P_NODE_29461_length_276_cov_1.295567_g29336_i0 PRJNA1182301 29461 276 1.295567 3.57576492 Natronomonas sp. LN261 2750669 Archaea Archaea 169 1.4299999999999999e-46   NR WP_181693315.1 2750669 g29336 i0 91.2 0.989130434782609 91 8 98.9 0 275 3 818 908 WP_181693315.1 DNA polymerase domain-containing protein [Natronomonas sp. LN261] diamond 273 169 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natronomonadaceae Natronomonas Natronomonas sp. LN261
27628653 27628653 PRJNA1182301_P_NODE_36944_length_266_cov_1.512953_g36819_i0 PRJNA1182301 36944 266 1.512953 4.02445498 Halobacteriaceae 2236 Archaea Archaea 45.1 0.00757   NR MFB6082214.1 1963275 g36819 i0 63.3 0.676691729323308 30 11 33.8 0 264 175 654 683 MFB6082214.1 type B DNA-directed DNA polymerase [Halanaeroarchaeum sp.] diamond 180 45.1 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halobacteriaceae Halanaeroarchaeum Halanaeroarchaeum sp.
28240599 28240599 PRJNA1182301_P_NODE_21006_length_287_cov_2.471963_g20881_i0 PRJNA1182301 21006 287 2.471963 7.09453381 Natronomonas sp. LN261 2750669 Archaea Archaea 154 2.5299999999999993e-42   NR WP_181692427.1 2750669 g20881 i0 95.3 0.888501742160279 85 4 88.9 0 1 255 432 516 WP_181692427.1 hypothetical protein [Natronomonas sp. LN261] diamond 255 154 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natronomonadaceae Natronomonas Natronomonas sp. LN261
28335508 28335508 PRJNA1182301_P_NODE_61806_length_242_cov_0.911243_g61681_i0 PRJNA1182301 61806 242 0.911243 2.20520806 Natronomonas sp. LN261 2750669 Archaea Archaea 151 1.31e-44   NR WP_181691783.1 2750669 g61681 i0 92.5 0.991735537190083 80 6 99.2 0 240 1 73 152 WP_181691783.1 helix-turn-helix transcriptional regulator [Natronomonas sp. LN261] diamond 240 151 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natronomonadaceae Natronomonas Natronomonas sp. LN261
28493508 28493508 PRJNA1182301_P_NODE_66467_length_231_cov_2.620253_g66342_i0 PRJNA1182301 66467 231 2.620253 6.05278443 Natronomonas sp. LN261 2750669 Archaea Archaea 79.3 4.08e-15   NR WP_181692687.1 2750669 g66342 i0 85.7 0.636363636363636 49 7 63.6 0 60 206 921 969 WP_181692687.1 BGTF surface domain-containing protein [Natronomonas sp. LN261] diamond 147 79.3 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natronomonadaceae Natronomonas Natronomonas sp. LN261
29471901 29471901 PRJNA1182301_P_NODE_54410_length_247_cov_1.362069_g54285_i0 PRJNA1182301 54410 247 1.362069 3.36431043 Halanaeroarchaeum sulfurireducens 1604004 Archaea Archaea 95.5 3.26e-22   NR WP_050047757.1 1604004 g54285 i0 79 1.50607287449393 62 13 75.3 0 61 246 133 194 WP_050047757.1 dienelactone hydrolase family protein [Halanaeroarchaeum sulfurireducens] diamond 372 95.5 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halobacteriaceae Halanaeroarchaeum Halanaeroarchaeum sulfurireducens
31228636 31228636 PRJNA1182301_P_NODE_43115_length_258_cov_1.605405_g42990_i0 PRJNA1182301 43115 258 1.605405 4.1419449 Halanaeroarchaeum 1656823 Archaea Archaea 101 5.34e-23   NR WP_050047778.1 1604004 g42990 i0 82.5 3.62790697674419 63 11 73.3 0 189 1 1 63 WP_050047778.1 MgtC/SapB family protein [Halanaeroarchaeum sulfurireducens] diamond 936 102 0.990196078431373 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halobacteriaceae Halanaeroarchaeum Halanaeroarchaeum sulfurireducens
31778902 31778902 PRJNA1182301_P_NODE_26957_length_279_cov_1.975728_g26832_i0 PRJNA1182301 26957 279 1.975728 5.51228112 Natronomonas sp. LN261 2750669 Archaea Archaea 157 1.78e-44   NR WP_181691260.1 2750669 g26832 i0 95.7 0.989247311827957 92 4 98.9 0 277 2 141 232 WP_181691260.1 signal peptidase I [Natronomonas sp. LN261] diamond 276 157 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natronomonadaceae Natronomonas Natronomonas sp. LN261
32127214 32127214 PRJNA1182301_P_NODE_36778_length_266_cov_1.595855_g36653_i0 PRJNA1182301 36778 266 1.595855 4.2449743 Halolamina salina 1220023 Archaea Archaea 42 0.0442   NR WP_379732489.1 1220023 g36653 i0 40 0.676691729323308 60 33 67.7 2 61 240 71 127 WP_379732489.1 cytidine deaminase [Halolamina salina] diamond 180 42 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halolamina Halolamina salina

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;