RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA1148965" and tax_kingdom = "Bacillati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Bacillati · 7 ✖

bioproject 1

  • PRJNA1148965 · 7 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8689605 8689605 PRJNA1148965_S_NODE_707_length_253_cov_0.866667_g704_i0 PRJNA1148965 707 253 0.866667 2.19266751 Bacillati 1783272 Bacteria Bacteria 377 3.33e-100   NTclustered gi|2179631034|gb|CP090928.1| 1282 g704 i0 98.592 147.343873517787 213 3 84 0 17 229 1105 893 Staphylococcus epidermidis strain 48 plasmid pSE48-4, complete sequence blastn 37278 377 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus epidermidis
9964720 9964720 PRJNA1148965_S_NODE_48_length_568_cov_1.331313_g46_i0 PRJNA1148965 48 568 1.331313 7.56185784 Bacillus 1386 Bacteria Bacteria 459 2.8199999999999996e-124   NTclustered gi|2257786247|gb|CP085402.1| 1392 g46 i0 100 43.6619718309859 248 0 44 0 321 568 3965601 3965354 Bacillus anthracis strain CMF9 chromosome, complete genome blastn 24800 459 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Bacillaceae Bacillus Bacillus anthracis
11239853 11239853 PRJNA1148965_S_NODE_669_length_257_cov_0.891304_g666_i0 PRJNA1148965 669 257 0.891304 2.29065128 Bacillus 1386 Bacteria Bacteria 470 5.45e-128   NTclustered gi|984728683|gb|CP014179.1| 1392 g666 i0 99.611 100 257 1 100 0 1 257 3949950 3949694 Bacillus anthracis strain Stendal chromosome, complete genome blastn 25700 470 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Bacillaceae Bacillus Bacillus anthracis
11239854 11239854 PRJNA1148965_S_NODE_89_length_465_cov_1.724490_g86_i0 PRJNA1148965 89 465 1.72449 8.0188785 Bacillus 1386 Bacteria Bacteria 710 0   NTclustered gi|984728683|gb|CP014179.1| 1392 g86 i0 99.742 1043.69677419355 387 1 83 0 59 445 13087 12701 Bacillus anthracis strain Stendal chromosome, complete genome blastn 485319 710 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Bacillaceae Bacillus Bacillus anthracis
11239855 11239855 PRJNA1148965_S_NODE_9_length_942_cov_2.235903_g7_i0 PRJNA1148965 9 942 2.235903 21.06220626 Bacillus 1386 Bacteria Bacteria 872 0   NTclustered gi|2257786247|gb|CP085402.1| 1392 g7 i0 99.789 93.8460721868365 475 1 94 0 62 536 3972107 3972581 Bacillus anthracis strain CMF9 chromosome, complete genome blastn 88403 872 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Bacillaceae Bacillus Bacillus anthracis
15064239 15064239 PRJNA1148965_S_NODE_12_length_897_cov_11.253641_g10_i0 PRJNA1148965 12 897 11.253641 100.94515977 Bacillus 1386 Bacteria Bacteria 1447 0   NTclustered gi|2257786247|gb|CP085402.1| 1392 g10 i0 99.747 87.8472686733556 789 2 88 0 33 821 3357929 3357141 Bacillus anthracis strain CMF9 chromosome, complete genome blastn 78799 1447 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Bacillaceae Bacillus Bacillus anthracis
17614297 17614297 PRJNA1148965_S_NODE_34_length_613_cov_1.590741_g32_i0 PRJNA1148965 34 613 1.590741 9.75124233 Bacillus 1386 Bacteria Bacteria 1127 0   NTclustered gi|2257786247|gb|CP085402.1| 1392 g32 i0 99.837 99.8613376835237 613 1 100 0 1 613 3357108 3356496 Bacillus anthracis strain CMF9 chromosome, complete genome blastn 61215 1127 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Bacillaceae Bacillus Bacillus anthracis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;