RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA1148190" and tax_phylum = "Candidatus Ryaniibacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Ryaniibacteriota · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA1148190 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10498423 10498423 PRJNA1148190_P_NODE_37309_length_1074_cov_1.768232_g27077_i0 PRJNA1148190 37309 1074 1.768232 18.99081168 Candidatus Ryanbacteria bacterium RIFCSPLOWO2_ 2518621 Bacteria Bacteria 462 6.769999999999999e-161   NR OGZ56440.1 1802128 g27077 i0 69.3 24.7932960893855 306 94 85.5 0 8 925 1 306 OGZ56440.1 MAG: GDP-fucose synthetase [Candidatus Ryanbacteria bacterium RIFCSPLOWO2_02_FULL_45_11c] diamond 26628 462 1 Bacteria Bacteria candidate phyla   Candidatus Ryaniibacteriota         Candidatus Ryanbacteria bacterium RIFCSPLOWO2_02_FULL_45_11c
26679431 26679431 PRJNA1148190_P_NODE_147841_length_432_cov_2.490251_g136675_i0 PRJNA1148190 147841 432 2.490251 10.75788432 Pseudomonadati 3379134 Bacteria Bacteria 240 2.86e-72   NR OGZ44495.1 1802114 g136675 i0 76.9 2.97916666666667 143 33 99.3 0 2 430 206 348 OGZ44495.1 MAG: hypothetical protein A2719_05225 [Candidatus Ryanbacteria bacterium RIFCSPHIGHO2_01_FULL_45_22] diamond 1287 241 0.995850622406639 Bacteria Bacteria candidate phyla   Candidatus Ryaniibacteriota         Candidatus Ryanbacteria bacterium RIFCSPHIGHO2_01_FULL_45_22
30249458 30249458 PRJNA1148190_P_NODE_614972_length_250_cov_0.870056_g603799_i0 PRJNA1148190 614972 250 0.870056 2.17514 Bacteria 2 Bacteria Bacteria 59.3 5.93e-8   NR OGZ52695.1 1802126 g603799 i0 45 1.956 80 44 96 0 241 2 248 327 OGZ52695.1 MAG: hypothetical protein A3B25_03500 [Candidatus Ryanbacteria bacterium RIFCSPLOWO2_01_FULL_48_26] diamond 489 59.3 1 Bacteria Bacteria candidate phyla   Candidatus Ryaniibacteriota         Candidatus Ryanbacteria bacterium RIFCSPLOWO2_01_FULL_48_26
32683074 32683074 PRJNA1148190_P_NODE_216540_length_364_cov_1.309278_g205370_i0 PRJNA1148190 216540 364 1.309278 4.76577192 Bacteria 2 Bacteria Bacteria 78.6 2.9e-15   NR OGZ52894.1 1802123 g205370 i0 72.3 2.68681318681319 47 13 38.7 0 2 142 137 183 OGZ52894.1 MAG: hypothetical protein A3F26_01765 [Candidatus Ryanbacteria bacterium RIFCSPHIGHO2_12_FULL_47_12b] diamond 978 78.6 1 Bacteria Bacteria candidate phyla   Candidatus Ryaniibacteriota         Candidatus Ryanbacteria bacterium RIFCSPHIGHO2_12_FULL_47_12b

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;