RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1148190" and tax_clade = "OMG group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • OMG group · 2 ✖

bioproject 1

  • PRJNA1148190 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15596135 15596135 PRJNA1148190_P_NODE_274173_length_331_cov_1.701550_g263002_i0 PRJNA1148190 274173 331 1.70155 5.6321305 OM182 bacterium 2510334 Bacteria Bacteria 230 1.3399999999999998e-55   NTclustered gi|2921923768|gb|CP182805.1| 2510334 g263002 i0 80.592 84.1268882175227 304 53 91 5 18 318 2745882 2746182 MAG: OM182 bacterium isolate amkv21 chromosome, complete genome blastn 27846 230 1 Bacteria OMG group Pseudomonadati Pseudomonadota Gammaproteobacteria       OM182 bacterium
24523329 24523329 PRJNA1148190_P_NODE_563360_length_254_cov_1.701657_g552187_i0 PRJNA1148190 563360 254 1.701657 4.32220878 OM182 bacterium 2510334 Bacteria Bacteria 73.1 1.77e-8   NTclustered gi|2836059185|gb|CP121333.1| 2510334 g552187 i0 87.879 1.44094488188976 66 3 25 5 138 201 240609 240671 MAG: OM182 bacterium isolate NCC532_bact_4768 chromosome, complete genome blastn 366 73.1 1 Bacteria OMG group Pseudomonadati Pseudomonadota Gammaproteobacteria       OM182 bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;