RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1148190" and tax_clade = "Candidatus Porisulfidus"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Candidatus Porisulfidus · 2 ✖

bioproject 1

  • PRJNA1148190 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6673508 6673508 PRJNA1148190_P_NODE_435066_length_279_cov_1.495146_g423893_i0 PRJNA1148190 435066 279 1.495146 4.17145734 uncultured candidatus Porisulfidus sp. 3039487 Bacteria Bacteria 52.8 0.026   NTclustered gi|2546771600|emb|OY288106.1| 3039487 g423893 i0 100 0.100358422939068 28 0 10 0 42 69 795345 795318 MAG: uncultured candidatus Porisulfidus sp. isolate caeacd0d-8b14-42db-aaa0-72ba3dde193c genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria Candidatus Porisulfidus Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales     uncultured candidatus Porisulfidus sp.
21973034 21973034 PRJNA1148190_P_NODE_4798_length_5756_cov_14.906915_g567_i13 PRJNA1148190 4798 5756 14.906915 858.0420274 uncultured candidatus Porisulfidus sp. 3039487 Bacteria Bacteria 58.4 0.013   NTclustered gi|2893356057|emb|OZ220480.1| 3039487 g567 i13 100 0.00538568450312717 31 0 1 0 3926 3956 653292 653322 MAG: uncultured candidatus Porisulfidus sp. isolate 164bb96d-58d1-42e1-9c94-80d65ec326bd genome assembly, chromosome: 1 blastn 31 58.4 1 Bacteria Candidatus Porisulfidus Pseudomonadati Pseudomonadota Gammaproteobacteria Chromatiales     uncultured candidatus Porisulfidus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;