RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1148190" and tax_clade = "BD1-7 clade"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • BD1-7 clade · 2 ✖

bioproject 1

  • PRJNA1148190 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
297950 297950 PRJNA1148190_P_NODE_6041_length_4864_cov_7.996034_g1953_i2 PRJNA1148190 6041 4864 7.996034 388.92709376 Gammaproteobacteria 1236 Bacteria Bacteria 229 4.4399999999999994e-61   NR EAW32796.1 247633 g1953 i2 43.2 0.789473684210526 322 166 19.7 7 1168 212 4 311 EAW32796.1 LPS biosynthesis protein RfaE [marine gamma proteobacterium HTCC2143] diamond 3840 230 0.995652173913044 Bacteria BD1-7 clade Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Spongiibacteraceae   marine gamma proteobacterium HTCC2143
299130 299130 PRJNA1148190_P_NODE_7021_length_4325_cov_8.634525_g1953_i3 PRJNA1148190 7021 4325 8.634525 373.44320625 Gammaproteobacteria 1236 Bacteria Bacteria 229 3.76e-61   NR EAW32796.1 247633 g1953 i3 43.2 0.887861271676301 322 166 22.1 7 1168 212 4 311 EAW32796.1 LPS biosynthesis protein RfaE [marine gamma proteobacterium HTCC2143] diamond 3840 230 0.995652173913044 Bacteria BD1-7 clade Pseudomonadati Pseudomonadota Gammaproteobacteria Cellvibrionales Spongiibacteraceae   marine gamma proteobacterium HTCC2143

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;