metadata
Tables
contig_metadata
query, bioproject, node, length, coverage, rel_abundance, taxname_lca, taxid_lca, taxoncategory, taxoncategorysimple, bits, evalue, lowcoverage_flag, analysis_used, target, taxid, gene, allele, pident, sumperc_cov, alnlen, mismatch, qcov, gapopen, qstart, qend, tstart, tend, target_title, analysis, sumalnlen, maxbits, bits_percmax, tax_superkingdom, tax_clade, tax_kingdom, tax_phylum, tax_class, tax_order, tax_family, tax_genus, tax_species
33,181,289 rows
run_metadata
run.accession, experiment.accession, sample.accession, study.accession, bioproject, study.title, study.alias, study.type, study.abstract, study.attributes, study.PMIDs, sample.description, sample.title, sample.alias, sample.centername, sample.attributes, GEOsample.title, GEOsample.dataprocessing, GEOsample.source, GEOsample.treatmentprotocol, GEOsample.extractprotocol, GEOsample.growthprotocol, GEOsample.characteristics, GEOsample.accession, experiment.title, experiment.alias, experiment.library_name, experiment.design_description, experiment.library_construction_protocol, experiment.attributes, experiment.library_strategy, experiment.library_source, experiment.library_selection, experiment.library_layout, experiment.platform, experiment.instrument_model, experiment.spot_descriptor, experiment.study_ref, run.title, run.attributes, run.filename, run.semantic_name, run.total_bases, run.total_spots, run.alias, run.read_lengths, run.base_counts, run.r1_length, run.r2_length, run.r3_length, run.r4_length, run.Acount, run.Ccount, run.Gcount, run.Tcount, run.Ncount, run.experiment, run.pool_member, submission.accession, submission.srasource, submission.bioprojectsource, seqdetective.n_mates, seqdetective.mapping_rate.mate1, seqdetective.mapping_rate.mate2, seqdetective.nofeature_rate.mate1, seqdetective.nofeature_rate.mate2, seqdetective.sparsity.mate1, seqdetective.sparsity.mate2, seqdetective.pos_strand_rate.mate1, seqdetective.pos_strand_rate.mate2, seqdetective.readlen.mate1, seqdetective.readlen.mate2, seqdetective.judgement.mate1, seqdetective.judgement.mate2, seqdetective.judgement.reason, platform_family, instrument_generation, read_bias, selection_class, prep_kit, sc_or_bulk, tech_class, technology, tech_variant, submission.bioprojectsource.country, earliest_date, devstage_curation, devstage_curation_coarse, tissue_curation, tissue_curation_coarse
77,329 rows