metadata
Tables
contig_metadata
query, bioproject, node, length, coverage, rel_abundance, taxname_lca, taxid_lca, taxoncategory, taxoncategorysimple, bits, evalue, lowcoverage_flag, analysis_used, target, taxid, gene, allele, pident, sumperc_cov, alnlen, mismatch, qcov, gapopen, qstart, qend, tstart, tend, target_title, analysis, sumalnlen, maxbits, bits_percmax, tax_superkingdom, tax_clade, tax_kingdom, tax_phylum, tax_class, tax_order, tax_family, tax_genus, tax_species
33,181,289 rows
gene_id_mapping
gene_id, GeneID, ZFIN, miRBase, Ensembl_gene_id_from_NCBI, Ensembl_gene_id_from_ZFIN, Ensembl_gene_id
49,663 rows
run_metadata
run.accession, experiment.accession, sample.accession, study.accession, bioproject, study.title, study.alias, study.type, study.abstract, study.attributes, study.PMIDs, sample.description, sample.title, sample.alias, sample.centername, sample.attributes, GEOsample.title, GEOsample.dataprocessing, GEOsample.source, GEOsample.treatmentprotocol, GEOsample.extractprotocol, GEOsample.growthprotocol, GEOsample.characteristics, GEOsample.accession, experiment.title, experiment.alias, experiment.library_name, experiment.design_description, experiment.library_construction_protocol, experiment.attributes, experiment.library_strategy, experiment.library_source, experiment.library_selection, experiment.library_layout, experiment.platform, experiment.instrument_model, experiment.spot_descriptor, experiment.study_ref, run.title, run.attributes, run.filename, run.semantic_name, run.total_bases, run.total_spots, run.alias, run.read_lengths, run.base_counts, run.r1_length, run.r2_length, run.r3_length, run.r4_length, run.Acount, run.Ccount, run.Gcount, run.Tcount, run.Ncount, run.experiment, run.pool_member, submission.accession, submission.srasource, submission.bioprojectsource, seqdetective.n_mates, seqdetective.mapping_rate.mate1, seqdetective.mapping_rate.mate2, seqdetective.nofeature_rate.mate1, seqdetective.nofeature_rate.mate2, seqdetective.sparsity.mate1, seqdetective.sparsity.mate2, seqdetective.pos_strand_rate.mate1, seqdetective.pos_strand_rate.mate2, seqdetective.readlen.mate1, seqdetective.readlen.mate2, seqdetective.judgement.mate1, seqdetective.judgement.mate2, seqdetective.judgement.reason, platform_family, instrument_generation, read_bias, selection_class, prep_kit, sc_or_bulk, tech_class, technology, tech_variant, submission.bioprojectsource.country, earliest_date, devstage_curation, devstage_curation_coarse, tissue_curation, tissue_curation_coarse
77,329 rows
viral_counts
submission.bioprojectsource, seqdetective.n_mates, seqdetective.mapping_rate.mate1, seqdetective.mapping_rate.mate2, seqdetective.nofeature_rate.mate1, seqdetective.nofeature_rate.mate2, seqdetective.sparsity.mate1, seqdetective.sparsity.mate2, seqdetective.pos_strand_rate.mate1, seqdetective.pos_strand_rate.mate2, seqdetective.readlen.mate1, seqdetective.readlen.mate2, seqdetective.judgement.mate1, seqdetective.judgement.mate2, seqdetective.judgement.reason, platform_family, instrument_generation, read_bias, selection_class, prep_kit, sc_or_bulk, tech_class, technology, tech_variant, submission.bioprojectsource.country, earliest_date, devstage_curation, devstage_curation_coarse, tissue_curation, tissue_curation_coarse, Zebrafish jaw poxvirus, Danio blood picornavirus_Zebrafish picornavirus 2, Zebrafish influenza B-like virus, Zebrafish jaw picornavirus, Zebrafish hepatic paramyxovirus, Zebrafish gut calicivirus, Zebrafish rhabdo-like virus, Zebrafish arterivirus, Zebrafish neurinoma calicivirus, Zebrafish neural hantavirus, Zebrafish systemic paramyxovirus, Zebrafish influenza-like virus, Zebrafish adomavirus, Zebrafish cardiovascular hantavirus, Zebrafish systemic calicivirus, Zebrafish gonadal hantavirus, Spring viraemia of carp virus, Cyprinid herpesvirus 3, Zebrafish picornavirus 1, Redspotted grouper nervous necrosis virus, Rocky Mountain birnavirus, Largemouth bass virus, Infectious Salmon Anemia Virus, Myotis ricketti associated fish calicivirus, Wenzhou shark flavivirus, Grass carp reovirus, Singapore grouper virus, endogenous_or_nonfish Pimephales minnow adintovirus, endogenous_or_nonfish Chuvivirus, endogenous_or_nonfish Sea turtle neural virus 1, endogenous_or_nonfish Psittacidae aveparvovirus, endogenous_or_nonfish Adintovirus anguilla10665, endogenous_or_nonfish African cichlid piscichuvirus, endogenous_or_nonfish Salarius guttatus piscichuvirus, endogenous_or_nonfish Deltainfluenzavirus, endogenous_or_nonfish Fish-associated parvo-like hybrid virus, endogenous_or_nonfish Fish-associated picorna-like virus 3, endogenous_or_nonfish Psittaciform aveparvovirus, endogenous_or_nonfish Flumine Astrovirus 3, endogenous_or_nonfish Luscinia sibilans parvo-like hybrid virus, endogenous_or_nonfish Hardyhead chuvirus, endogenous_or_nonfish Leatherback sea turtle adomavirus, endogenous_or_nonfish Phoenicopteridae parvo-like hybrid virus, endogenous_or_nonfish Phoenicopterus roseus parvo-like hybrid virus, insufficient_evidence Cyprinid herpesvirus 1, insufficient_evidence Astyanax tetra cavefish adintovirus, insufficient_evidence Larimichthys croaker adintovirus, insufficient_evidence Cutthroat trout virus, insufficient_evidence Catfish adomavirus, insufficient_evidence Blueface angelfish adomavirus, insufficient_evidence Blotched snakehead virus, insufficient_evidence Guangdong catfish astro-like virus, insufficient_evidence Snakehead retrovirus, Run
61,615 rows
viruses_fish_associated_curated
contig_withLCA_withcluster, clusterLCA_curated, Category, contig_withLCA, shortcontigname, clusterLCA, clusterLCAcurated_contigcount, clusterLCAcurated_bioprojectcount, clusterLCAcurated_clustercount, shortclustername, cluster, clustersize, bioprojectsbycluster, bioproject, node, length, coverage, rel_abundance, taxname_lca_NTorNR, taxid_lca_NTorNR, taxoncategory_NTorNR, taxoncategorysimple_NTorNR, bits_NTorNR, evalue_NTorNR, viruscategory_NTorNR, viruscategorysimple_NTorNR, analysis_used, contig_name, lowcoverage_flag, target_title_NTorNR, target_NTorNR, taxid_NTorNR, gene_NTorNR, allele_NTorNR, pident_NTorNR, sumperc_cov_NTorNR, alnlen_NTorNR, mismatch_NTorNR, qcov_NTorNR, gapopen_NTorNR, qstart_NTorNR, qend_NTorNR, tstart_NTorNR, tend_NTorNR, sumalnlen_NTorNR, maxbits_NTorNR, bits_percmax_NTorNR, tax_superkingdom_NTorNR, tax_clade_NTorNR, tax_kingdom_NTorNR, tax_phylum_NTorNR, tax_class_NTorNR, tax_order_NTorNR, tax_family_NTorNR, tax_genus_NTorNR, tax_species_NTorNR, classification, taxname_lca_NTclustered, taxname_lca_NR, target_NTclustered, taxoncategory_NTclustered, taxoncategory_NR, taxoncategorysimple_NTclustered, taxoncategorysimple_NR, bits_NTclustered, bits_NR, evalue_NTclustered, evalue_NR
10,501 rows