viruses_fish_associated_curated: 10232
This data as json
| rowid | contig_withLCA_withcluster | clusterLCA_curated | Category | contig_withLCA | shortcontigname | clusterLCA | clusterLCAcurated_contigcount | clusterLCAcurated_bioprojectcount | clusterLCAcurated_clustercount | shortclustername | cluster | clustersize | bioprojectsbycluster | bioproject | node | length | coverage | rel_abundance | taxname_lca_NTorNR | taxid_lca_NTorNR | taxoncategory_NTorNR | taxoncategorysimple_NTorNR | bits_NTorNR | evalue_NTorNR | viruscategory_NTorNR | viruscategorysimple_NTorNR | analysis_used | contig_name | lowcoverage_flag | target_title_NTorNR | target_NTorNR | taxid_NTorNR | gene_NTorNR | allele_NTorNR | pident_NTorNR | sumperc_cov_NTorNR | alnlen_NTorNR | mismatch_NTorNR | qcov_NTorNR | gapopen_NTorNR | qstart_NTorNR | qend_NTorNR | tstart_NTorNR | tend_NTorNR | sumalnlen_NTorNR | maxbits_NTorNR | bits_percmax_NTorNR | tax_superkingdom_NTorNR | tax_clade_NTorNR | tax_kingdom_NTorNR | tax_phylum_NTorNR | tax_class_NTorNR | tax_order_NTorNR | tax_family_NTorNR | tax_genus_NTorNR | tax_species_NTorNR | classification | taxname_lca_NTclustered | taxname_lca_NR | target_NTclustered | taxoncategory_NTclustered | taxoncategory_NR | taxoncategorysimple_NTclustered | taxoncategorysimple_NR | bits_NTclustered | bits_NR | evalue_NTclustered | evalue_NR |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 10232 | PRJNA939369_CONTIG_239|Deltainfluenzavirus|CLUSTER3_Deltainfluenzavirus|2|1 | Deltainfluenzavirus | Endogenous or not fish-associated | PRJNA939369_CONTIG_239|Deltainfluenzavirus | PRJNA939369_CONTIG_239 | Deltainfluenzavirus | 7 | 1 | 7 | CLUSTER3_Deltainfluenzavirus|2|1 | NC_036619_1_Influenza_D_virus_D_swine_Oklahoma_1334_2011_segment_3_polymerase_3_P3_gene_complete_cds | 2 | 1 | PRJNA939369 | 239 | 2188 | 13.160757 | 287.9573632 | Deltainfluenzavirus | 1511083 | Viruses | Viruses | 3988.0 | 0.0 | Deltainfluenzavirus | Non-phage | NTclustered | PRJNA939369_S_NODE_239_length_2188_cov_13.160757_g109_i0 | Influenza D virus (D/swine/Oklahoma/1334/2011) segment 3 polymerase 3 (P3) gene, complete cds | gi|1328406498|ref|NC_036619.1| | 1173138 | g109 | i0 | 99.588 | 98.84232176 | 2186 | 9 | 99.0 | 0 | 3 | 2188 | 2 | 2187 | 216267 | 4026.0 | 0.990561351 | Viruses | Riboviria | Orthornavirae | Negarnaviricota | Insthoviricetes | Articulavirales | Orthomyxoviridae | Deltainfluenzavirus | Deltainfluenzavirus influenzae | Viruses;Riboviria;Orthornavirae;Negarnaviricota;Insthoviricetes;Articulavirales;Orthomyxoviridae;Deltainfluenzavirus | Deltainfluenzavirus | Influenza D virus (D/bovine/Kansas/13-21/2 | gi|1328406498|ref|NC_036619.1| | Viruses | Viruses | Viruses | Viruses | 3988.0 | 1398.0 | 0.0 | 0.0 |