viruses_fish_associated_curated: 10231
This data as json
| rowid | contig_withLCA_withcluster | clusterLCA_curated | Category | contig_withLCA | shortcontigname | clusterLCA | clusterLCAcurated_contigcount | clusterLCAcurated_bioprojectcount | clusterLCAcurated_clustercount | shortclustername | cluster | clustersize | bioprojectsbycluster | bioproject | node | length | coverage | rel_abundance | taxname_lca_NTorNR | taxid_lca_NTorNR | taxoncategory_NTorNR | taxoncategorysimple_NTorNR | bits_NTorNR | evalue_NTorNR | viruscategory_NTorNR | viruscategorysimple_NTorNR | analysis_used | contig_name | lowcoverage_flag | target_title_NTorNR | target_NTorNR | taxid_NTorNR | gene_NTorNR | allele_NTorNR | pident_NTorNR | sumperc_cov_NTorNR | alnlen_NTorNR | mismatch_NTorNR | qcov_NTorNR | gapopen_NTorNR | qstart_NTorNR | qend_NTorNR | tstart_NTorNR | tend_NTorNR | sumalnlen_NTorNR | maxbits_NTorNR | bits_percmax_NTorNR | tax_superkingdom_NTorNR | tax_clade_NTorNR | tax_kingdom_NTorNR | tax_phylum_NTorNR | tax_class_NTorNR | tax_order_NTorNR | tax_family_NTorNR | tax_genus_NTorNR | tax_species_NTorNR | classification | taxname_lca_NTclustered | taxname_lca_NR | target_NTclustered | taxoncategory_NTclustered | taxoncategory_NR | taxoncategorysimple_NTclustered | taxoncategorysimple_NR | bits_NTclustered | bits_NR | evalue_NTclustered | evalue_NR |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 10231 | PRJNA939369_CONTIG_219|Deltainfluenzavirus|CLUSTER2_Deltainfluenzavirus|2|1 | Deltainfluenzavirus | Endogenous or not fish-associated | PRJNA939369_CONTIG_219|Deltainfluenzavirus | PRJNA939369_CONTIG_219 | Deltainfluenzavirus | 7 | 1 | 7 | CLUSTER2_Deltainfluenzavirus|2|1 | MN165245_1_Influenza_D_virus_D_bovine_Italy_12002_1_2018_segment_2_polymerase_PB1_PB1_gene_complete_cds | 2 | 1 | PRJNA939369 | 219 | 2316 | 13.310299 | 308.2665248 | Deltainfluenzavirus | 1511083 | Viruses | Viruses | 4261.0 | 0.0 | Deltainfluenzavirus | Non-phage | NTclustered | PRJNA939369_S_NODE_219_length_2316_cov_13.310299_g94_i0 | Influenza D virus (D/bovine/Italy/12002-1/2018) segment 2 polymerase PB1 (PB1) gene, complete cds | gi|1707337734|gb|MN165245.1| | 1511084 | g94 | i0 | 99.87 | 99.50345423 | 2316 | 3 | 100.0 | 0 | 1 | 2316 | 2322 | 7 | 230450 | 4272.0 | 0.997425094 | Viruses | Riboviria | Orthornavirae | Negarnaviricota | Insthoviricetes | Articulavirales | Orthomyxoviridae | Deltainfluenzavirus | Deltainfluenzavirus influenzae | Viruses;Riboviria;Orthornavirae;Negarnaviricota;Insthoviricetes;Articulavirales;Orthomyxoviridae;Deltainfluenzavirus | Deltainfluenzavirus | Influenza D virus (D/swine/Italy/254578/2 | gi|1707337734|gb|MN165245.1| | Viruses | Viruses | Viruses | Viruses | 4261.0 | 1491.0 | 0.0 | 0.0 |