viruses_fish_associated_curated: 10230
This data as json
| rowid | contig_withLCA_withcluster | clusterLCA_curated | Category | contig_withLCA | shortcontigname | clusterLCA | clusterLCAcurated_contigcount | clusterLCAcurated_bioprojectcount | clusterLCAcurated_clustercount | shortclustername | cluster | clustersize | bioprojectsbycluster | bioproject | node | length | coverage | rel_abundance | taxname_lca_NTorNR | taxid_lca_NTorNR | taxoncategory_NTorNR | taxoncategorysimple_NTorNR | bits_NTorNR | evalue_NTorNR | viruscategory_NTorNR | viruscategorysimple_NTorNR | analysis_used | contig_name | lowcoverage_flag | target_title_NTorNR | target_NTorNR | taxid_NTorNR | gene_NTorNR | allele_NTorNR | pident_NTorNR | sumperc_cov_NTorNR | alnlen_NTorNR | mismatch_NTorNR | qcov_NTorNR | gapopen_NTorNR | qstart_NTorNR | qend_NTorNR | tstart_NTorNR | tend_NTorNR | sumalnlen_NTorNR | maxbits_NTorNR | bits_percmax_NTorNR | tax_superkingdom_NTorNR | tax_clade_NTorNR | tax_kingdom_NTorNR | tax_phylum_NTorNR | tax_class_NTorNR | tax_order_NTorNR | tax_family_NTorNR | tax_genus_NTorNR | tax_species_NTorNR | classification | taxname_lca_NTclustered | taxname_lca_NR | target_NTclustered | taxoncategory_NTclustered | taxoncategory_NR | taxoncategorysimple_NTclustered | taxoncategorysimple_NR | bits_NTclustered | bits_NR | evalue_NTclustered | evalue_NR |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 10230 | PRJNA939369_CONTIG_211|Deltainfluenzavirus|CLUSTER1_Deltainfluenzavirus|2|1 | Deltainfluenzavirus | Endogenous or not fish-associated | PRJNA939369_CONTIG_211|Deltainfluenzavirus | PRJNA939369_CONTIG_211 | Deltainfluenzavirus | 7 | 1 | 7 | CLUSTER1_Deltainfluenzavirus|2|1 | NC_036616_1_Influenza_D_virus_D_swine_Oklahoma_1334_2011_segment_1_polymerase_PB2_PB2_gene_complete_cds | 2 | 1 | PRJNA939369 | 211 | 2346 | 12.398592 | 290.8709683 | Deltainfluenzavirus | 1511083 | Viruses | Viruses | 4294.0 | 0.0 | Deltainfluenzavirus | Non-phage | NTclustered | PRJNA939369_S_NODE_211_length_2346_cov_12.398592_g90_i0 | Influenza D virus (D/swine/Oklahoma/1334/2011) segment 1 polymerase PB2 (PB2) gene, complete cds | gi|1328406492|ref|NC_036616.1| | 1173138 | g90 | i0 | 99.702 | 99.56180733 | 2346 | 7 | 100.0 | 0 | 1 | 2346 | 12 | 2357 | 233572 | 4316.0 | 0.994902688 | Viruses | Riboviria | Orthornavirae | Negarnaviricota | Insthoviricetes | Articulavirales | Orthomyxoviridae | Deltainfluenzavirus | Deltainfluenzavirus influenzae | Viruses;Riboviria;Orthornavirae;Negarnaviricota;Insthoviricetes;Articulavirales;Orthomyxoviridae;Deltainfluenzavirus | Deltainfluenzavirus | Influenza D virus | gi|1328406492|ref|NC_036616.1| | Viruses | Viruses | Viruses | Viruses | 4294.0 | 1519.0 | 0.0 | 0.0 |