viral_counts: 46
This data as json
| rowid | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse | Zebrafish jaw poxvirus | Danio blood picornavirus_Zebrafish picornavirus 2 | Zebrafish influenza B-like virus | Zebrafish jaw picornavirus | Zebrafish hepatic paramyxovirus | Zebrafish gut calicivirus | Zebrafish rhabdo-like virus | Zebrafish arterivirus | Zebrafish neurinoma calicivirus | Zebrafish neural hantavirus | Zebrafish systemic paramyxovirus | Zebrafish influenza-like virus | Zebrafish adomavirus | Zebrafish cardiovascular hantavirus | Zebrafish systemic calicivirus | Zebrafish gonadal hantavirus | Spring viraemia of carp virus | Cyprinid herpesvirus 3 | Zebrafish picornavirus 1 | Redspotted grouper nervous necrosis virus | Rocky Mountain birnavirus | Largemouth bass virus | Infectious Salmon Anemia Virus | Myotis ricketti associated fish calicivirus | Wenzhou shark flavivirus | Grass carp reovirus | Singapore grouper virus | endogenous_or_nonfish Pimephales minnow adintovirus | endogenous_or_nonfish Chuvivirus | endogenous_or_nonfish Sea turtle neural virus 1 | endogenous_or_nonfish Psittacidae aveparvovirus | endogenous_or_nonfish Adintovirus anguilla10665 | endogenous_or_nonfish African cichlid piscichuvirus | endogenous_or_nonfish Salarius guttatus piscichuvirus | endogenous_or_nonfish Deltainfluenzavirus | endogenous_or_nonfish Fish-associated parvo-like hybrid virus | endogenous_or_nonfish Fish-associated picorna-like virus 3 | endogenous_or_nonfish Psittaciform aveparvovirus | endogenous_or_nonfish Flumine Astrovirus 3 | endogenous_or_nonfish Luscinia sibilans parvo-like hybrid virus | endogenous_or_nonfish Hardyhead chuvirus | endogenous_or_nonfish Leatherback sea turtle adomavirus | endogenous_or_nonfish Phoenicopteridae parvo-like hybrid virus | endogenous_or_nonfish Phoenicopterus roseus parvo-like hybrid virus | insufficient_evidence Cyprinid herpesvirus 1 | insufficient_evidence Astyanax tetra cavefish adintovirus | insufficient_evidence Larimichthys croaker adintovirus | insufficient_evidence Cutthroat trout virus | insufficient_evidence Catfish adomavirus | insufficient_evidence Blueface angelfish adomavirus | insufficient_evidence Blotched snakehead virus | insufficient_evidence Guangdong catfish astro-like virus | insufficient_evidence Snakehead retrovirus | Run |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 46 | Umeå Univeristy | 2.0 | 0.94707 | 0.93454 | 0.03335 | 0.03308 | 0.80127 | 0.80708 | 0.56515 | 0.57038 | 151.0 | 151.0 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | poly_a | trueseq | bulk | bulk | bulk | Sweden | 2023-09-01 | Adult | Adult | Multi-tissue | Multi-system | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 3.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | SRR25868021 |