viral_counts: 43
This data as json
| rowid | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse | Zebrafish jaw poxvirus | Danio blood picornavirus_Zebrafish picornavirus 2 | Zebrafish influenza B-like virus | Zebrafish jaw picornavirus | Zebrafish hepatic paramyxovirus | Zebrafish gut calicivirus | Zebrafish rhabdo-like virus | Zebrafish arterivirus | Zebrafish neurinoma calicivirus | Zebrafish neural hantavirus | Zebrafish systemic paramyxovirus | Zebrafish influenza-like virus | Zebrafish adomavirus | Zebrafish cardiovascular hantavirus | Zebrafish systemic calicivirus | Zebrafish gonadal hantavirus | Spring viraemia of carp virus | Cyprinid herpesvirus 3 | Zebrafish picornavirus 1 | Redspotted grouper nervous necrosis virus | Rocky Mountain birnavirus | Largemouth bass virus | Infectious Salmon Anemia Virus | Myotis ricketti associated fish calicivirus | Wenzhou shark flavivirus | Grass carp reovirus | Singapore grouper virus | endogenous_or_nonfish Pimephales minnow adintovirus | endogenous_or_nonfish Chuvivirus | endogenous_or_nonfish Sea turtle neural virus 1 | endogenous_or_nonfish Psittacidae aveparvovirus | endogenous_or_nonfish Adintovirus anguilla10665 | endogenous_or_nonfish African cichlid piscichuvirus | endogenous_or_nonfish Salarius guttatus piscichuvirus | endogenous_or_nonfish Deltainfluenzavirus | endogenous_or_nonfish Fish-associated parvo-like hybrid virus | endogenous_or_nonfish Fish-associated picorna-like virus 3 | endogenous_or_nonfish Psittaciform aveparvovirus | endogenous_or_nonfish Flumine Astrovirus 3 | endogenous_or_nonfish Luscinia sibilans parvo-like hybrid virus | endogenous_or_nonfish Hardyhead chuvirus | endogenous_or_nonfish Leatherback sea turtle adomavirus | endogenous_or_nonfish Phoenicopteridae parvo-like hybrid virus | endogenous_or_nonfish Phoenicopterus roseus parvo-like hybrid virus | insufficient_evidence Cyprinid herpesvirus 1 | insufficient_evidence Astyanax tetra cavefish adintovirus | insufficient_evidence Larimichthys croaker adintovirus | insufficient_evidence Cutthroat trout virus | insufficient_evidence Catfish adomavirus | insufficient_evidence Blueface angelfish adomavirus | insufficient_evidence Blotched snakehead virus | insufficient_evidence Guangdong catfish astro-like virus | insufficient_evidence Snakehead retrovirus | Run |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 43 | Greenwood Genetic Center | 2.0 | 0.73788 | 0.74164 | 0.26347 | 0.27285 | 0.73914 | 0.74688 | 0.59711 | 0.60862 | 150.0 | 151.0 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | cdna_unspecified | unknown | bulk | bulk | bulk | United States | 2024-06-04 | Larval | Larval | Trunk | Surface Structure | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | SRR29285567 |