run_metadata: 9975
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 9975 | ERR5056252 | ERX4862321 | ERS4959150 | ERP123551 | PRJEB39971 | RNA sequencing data of ontogenetic and 9 days post harvest zebrafish scale regeneration | ena-STUDY-BRISTOL-20-08-2020-19:49:12:215-170 | Other | RNA sequencing Illumina was performed on total RNA harvested from three fish using ontogenetic and 9 days post harvest elasmoid scales. Aim is to identify novel factors that regulate dermal bone formation or metabolism. | bone|elasmoidin scale|osteogenesis|regeneration|zebrafish|ENA FIRST PUBLIC:2021 04 20|ENA LAST UPDATE:2020 08 20 | 9 days post harvest | Zebrafish scale RNA seq total RNA | SAMEA7198929 | BRISTOL | ENA FIRST PUBLIC:2021 04 20T00:31:21Z|ENA LAST UPDATE:2020 08 20T20:11:39Z|External Id:SAMEA7198929|INSDC center name:BRISTOL|INSDC first public:2021 04 20T00:31:21Z|INSDC last update:2020 08 20T20:11:39Z|INSDC status:public|Submitter Id:Regenerating 2|common name:zebrafish|dev stage:Adult 1 year|sample name:Regenerating 2|scientific name:Danio rerio|sex:male|tissue type:Elasmoid scale | Illumina HiSeq 2500 sequencing | ena EXPERIMENT BRISTOL 08 01 2021 15:14:53:483 7 | unspecified | 1 | RNA-Seq | TRANSCRIPTOMIC | DNase | SINGLE | ILLUMINA | Illumina HiSeq 2500 | ERP123551 | Illumina HiSeq 2500 sequencing | ENA FIRST PUBLIC:2021 04 20|ENA LAST UPDATE:2021 01 08 | ZFG-15-01_REG2_CAGATC_L001_R1_001.fastq.gz | fastq | 424788384.0 | 8329184.0 | ena RUN BRISTOL 08 01 2021 15:14:53:483 7 | 0:51 1:0 | A:103644078;C:99946940;G:98381633;T:122768121;N:47612 | 51 | 0 | 103644078 | 99946940 | 98381633 | 122768121 | 47612 | ERX4862321 | ERS4959150 | ERA3206662 | University of Bristol|European Nucleotide Archive | University of Bristol | 1 | 0.91867 | 0.08097 | 0.71388 | 0.44882 | 51 | B | usable mapping rate | illumina | hiseq_era | unknown | dnase | trueseq | bulk | unknown | unknown | United Kingdom | 2020-08-20 | Adult | Adult | Scale | Surface Structure |