run_metadata: 9972
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 9972 | ERR5056077 | ERX4862146 | ERS4959146 | ERP123551 | PRJEB39971 | RNA sequencing data of ontogenetic and 9 days post harvest zebrafish scale regeneration | ena-STUDY-BRISTOL-20-08-2020-19:49:12:215-170 | Other | RNA sequencing Illumina was performed on total RNA harvested from three fish using ontogenetic and 9 days post harvest elasmoid scales. Aim is to identify novel factors that regulate dermal bone formation or metabolism. | bone|elasmoidin scale|osteogenesis|regeneration|zebrafish|ENA FIRST PUBLIC:2021 04 20|ENA LAST UPDATE:2020 08 20 | day x | Zebrafish scale RNA seq total RNA | SAMEA7198925 | BRISTOL | ENA FIRST PUBLIC:2021 04 20T00:31:21Z|ENA LAST UPDATE:2020 08 20T20:11:39Z|External Id:SAMEA7198925|INSDC center name:BRISTOL|INSDC first public:2021 04 20T00:31:21Z|INSDC last update:2020 08 20T20:11:39Z|INSDC status:public|Submitter Id:Ontogenetic 1|common name:zebrafish|dev stage:Adult 1 year|sample name:Ontogenetic 1|scientific name:Danio rerio|sex:male|tissue type:Elasmoid scale | Illumina HiSeq 2500 sequencing | ena EXPERIMENT BRISTOL 08 01 2021 12:07:14:527 1 | unspecified | 1 | RNA-Seq | TRANSCRIPTOMIC | DNase | SINGLE | ILLUMINA | Illumina HiSeq 2500 | ERP123551 | Illumina HiSeq 2500 sequencing | ENA FIRST PUBLIC:2021 04 20|ENA LAST UPDATE:2021 01 08 | ZFG-15-01_ONT1_CGATGT_L001_R1_001.fastq.gz | fastq | 600285402.0 | 11770302.0 | ena RUN BRISTOL 08 01 2021 12:07:14:527 1 | 0:51 1:0 | A:148729943;C:136337224;G:136545524;T:178606078;N:66633 | 51 | 0 | 148729943 | 136337224 | 136545524 | 178606078 | 66633 | ERX4862146 | ERS4959146 | ERA3206631 | University of Bristol|European Nucleotide Archive | University of Bristol | 1 | 0.9026 | 0.10732 | 0.71683 | 0.47346 | 51 | B | usable mapping rate | illumina | hiseq_era | unknown | dnase | trueseq | bulk | unknown | unknown | United Kingdom | 2020-08-20 | Adult | Adult | Scale | Surface Structure |