run_metadata: 9499
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 9499 | ERR340744 | ERX313593 | ERS220813 | ERP001656 | PRJEB3181 | Transcriptome profiling of mutants from the zebrafish genome project | Transcriptome_profiling_of_mutants_from_the_zebrafish_genome_project-sc-2012-08-01T09:58:08Z-2311 | Transcriptome Analysis | Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos from the Zebrafish Mutation Project for transcriptome profiling | SAMEA2058540 | SC | ArrayExpress DevelopmentalStage:Hatching : 52 hpf Long pec ZFS:0000033 pec fin ZFS:0000034|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 09 16T10:16:26Z|ENA LAST UPDATE:2018 03 08T16:20:23Z|External Id:SAMEA2058540|INSDC center name:SC|INSDC first public:2013 09 16T10:16:26Z|INSDC last update:2018 03 08T16:20:23Z|INSDC status:public|Submitter Id:ZMP phenotype 10 1 sibling sc 2013 03 07T09:41:20Z 1580258|common name:zebrafish|sample description:3 prime end enriched mRNA from morphologically normal sibling embryos from ZMP phenotype10 clutch1. A 5 base indexing sequenceAGAAG is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph10|sample name:ZMP phenotype 10 1 sibling sc 2013 03 07T09:41:20Z 1580258|scientific name:Danio rerio|strain:mixed | 1 | SC EXP 9795 1#2 | 6856397 | Illumina sequencing of library 6856397 constructed from sample accession ERS220813 for study accession ERP001656. This is part of an Illumina multiplexed sequencing run 9795 1. This submission includes reads tagged with the sequence AGAAG. | qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | ERP001656 | Illumina HiSeq 2000 paired end sequencing | ENA FIRST PUBLIC:2013 09 16|ENA LAST UPDATE:2018 11 16 | 9795_1#2.bam | bam | 2620918020.0 | 18720843.0 | SC RUN 9795 1#2 | 0:65 1:75 | A:721085240;C:459705275;G:501075402;T:938914582;N:137521 | 65 | 75 | 721085240 | 459705275 | 501075402 | 938914582 | 137521 | ERX313593 | ERS220813 | ERA250651 | SC | Wellcome Sanger Institute | 2 | 0.4709 | 0.82951 | 0.10745 | 0.11822 | 0.89217 | 0.77916 | 0.62119 | 0.58753 | 65 | 75 | B | B | mate1-mate2 similar by mapping diff | illumina | hiseq_era | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2013-09-16 | Hatching | Embryo | Whole Organism | All anatomical structures |