run_metadata: 9480
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 9480 | ERR411493 | ERX377854 | ERS345908 | ERP001656 | PRJEB3181 | Transcriptome profiling of mutants from the zebrafish genome project | Transcriptome_profiling_of_mutants_from_the_zebrafish_genome_project-sc-2012-08-01T09:58:08Z-2311 | Transcriptome Analysis | Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos from the Zebrafish Mutation Project for transcriptome profiling | Danio rerio | SAMEA2177796 | Wellcome Sanger Institute | ArrayExpress DevelopmentalStage:Hatching : Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA first public:2014 01 21|ENA last update:2018 03 08|External Id:SAMEA2177796|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2014 01 21T09:19:28Z|INSDC last update:2018 03 08T15:25:32Z|INSDC status:public|Submitter Id:ZMP phenotype 25 1 mutant sc 2013 09 04T09:01:28Z 1687310|common name:zebrafish|sample description:3 prime end enriched mRNA from morphologically abnormal embryos from ZMP phenotype 25 clutch 1. A 5 base indexing sequence GAGGC is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph25|sample name:ZMP phenotype 25 1 mutant sc 2013 09 04T09:01:28Z 1687310|strain:mixed | Illumina HiSeq 2000 paired end sequencing | SC EXP 10828 2#1 | 8117814 | Illumina sequencing of library 8117814 constructed from sample accession ERS345908 for study accession ERP001656. This is part of an Illumina multiplexed sequencing run 10828 2. This submission includes reads tagged with the sequence GAGGC. | qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | ERP001656 | Illumina HiSeq 2000 paired end sequencing | ENA FIRST PUBLIC:2014 01 21|ENA LAST UPDATE:2018 11 16 | 10828_2#1.cram | cram | 2504132400.0 | 17886660.0 | SC RUN 10828 2#1 | 0:65 1:75 | A:692098832;C:431604575;G:453774267;T:925443351;N:1211375 | 65 | 75 | 692098832 | 431604575 | 453774267 | 925443351 | 1211375 | ERX377854 | ERS345908 | ERA281389 | SC | Wellcome Sanger Institute | 2 | 0.56274 | 0.85198 | 0.19551 | 0.22787 | 0.92521 | 0.77323 | 0.59329 | 0.58054 | 65 | 75 | B | B | mate1-mate2 similar by mapping diff | illumina | hiseq_era | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2014-01-21 | Hatching | Embryo | Whole Organism | All anatomical structures |