run_metadata: 9467
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 9467 | ERR411506 | ERX377867 | ERS345921 | ERP001656 | PRJEB3181 | Transcriptome profiling of mutants from the zebrafish genome project | Transcriptome_profiling_of_mutants_from_the_zebrafish_genome_project-sc-2012-08-01T09:58:08Z-2311 | Transcriptome Analysis | Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos from the Zebrafish Mutation Project for transcriptome profiling | SAMEA2177809 | SC | ArrayExpress DevelopmentalStage:Hatching : Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 01 21T09:19:28Z|ENA LAST UPDATE:2018 03 08T16:42:11Z|External Id:SAMEA2177809|INSDC center name:SC|INSDC first public:2014 01 21T09:19:28Z|INSDC last update:2018 03 08T16:42:11Z|INSDC status:public|Submitter Id:ZMP phenotype 27 2 sibling sc 2013 09 04T09:06:26Z 1687323|common name:zebrafish|sample description:3 prime end enriched mRNA from morphologically normal embryos from ZMP phenotype 27 clutch 2. A 5 base indexing sequence GCACG is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph27|sample name:ZMP phenotype 27 2 sibling sc 2013 09 04T09:06:26Z 1687323|scientific name:Danio rerio|strain:mixed | Illumina HiSeq 2000 paired end sequencing | SC EXP 10828 3#4 | 8117827 | Illumina sequencing of library 8117827 constructed from sample accession ERS345921 for study accession ERP001656. This is part of an Illumina multiplexed sequencing run 10828 3. This submission includes reads tagged with the sequence GCACG. | qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | ERP001656 | Illumina HiSeq 2000 paired end sequencing | ENA FIRST PUBLIC:2014 01 21|ENA LAST UPDATE:2018 11 16 | 10828_3#4.cram | cram | 2145907820.0 | 15327913.0 | SC RUN 10828 3#4 | 0:65 1:75 | A:601426377;C:363345308;G:401057987;T:779805294;N:272854 | 65 | 75 | 601426377 | 363345308 | 401057987 | 779805294 | 272854 | ERX377867 | ERS345921 | ERA281389 | SC | Wellcome Sanger Institute | 2 | 0.58661 | 0.81565 | 0.22017 | 0.23763 | 0.92502 | 0.78794 | 0.64768 | 0.65622 | 65 | 75 | B | B | mate1-mate2 similar by mapping diff | illumina | hiseq_era | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2014-01-21 | Hatching | Embryo | Whole Organism | All anatomical structures |