run_metadata: 9459
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 9459 | ERR411514 | ERX377875 | ERS345929 | ERP001656 | PRJEB3181 | Transcriptome profiling of mutants from the zebrafish genome project | Transcriptome_profiling_of_mutants_from_the_zebrafish_genome_project-sc-2012-08-01T09:58:08Z-2311 | Transcriptome Analysis | Paired end sequence data from the IlluminaHiSeq was prepared from mutant and wild type zebrafish embryos from the Zebrafish Mutation Project for transcriptome profiling | SAMEA2177817 | SC | ArrayExpress DevelopmentalStage:Hatching : Long pec ZFS:0000033|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2014 01 21T09:19:28Z|ENA LAST UPDATE:2018 03 08T16:43:00Z|External Id:SAMEA2177817|INSDC center name:SC|INSDC first public:2014 01 21T09:19:28Z|INSDC last update:2018 03 08T16:43:00Z|INSDC status:public|Submitter Id:ZMP phenotype 29 1 sibling sc 2013 09 04T09:06:36Z 1687331|common name:zebrafish|sample description:3 prime end enriched mRNA from morphologically normal embryos from ZMP phenotype 29 clutch 1. A 5 base indexing sequence AGAAG is bases 6 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi bin/Projects/D rerio/zmp/search.pl?q=zmp ph29|sample name:ZMP phenotype 29 1 sibling sc 2013 09 04T09:06:36Z 1687331|scientific name:Danio rerio|strain:mixed | Illumina HiSeq 2000 paired end sequencing | SC EXP 10828 4#2 | 8117835 | Illumina sequencing of library 8117835 constructed from sample accession ERS345929 for study accession ERP001656. This is part of an Illumina multiplexed sequencing run 10828 4. This submission includes reads tagged with the sequence AGAAG. | qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | ERP001656 | Illumina HiSeq 2000 paired end sequencing | ENA FIRST PUBLIC:2014 01 21|ENA LAST UPDATE:2018 11 16 | 10828_4#2.cram | cram | 2223095140.0 | 15879251.0 | SC RUN 10828 4#2 | 0:65 1:75 | A:645763662;C:353009980;G:389178180;T:834720101;N:423217 | 65 | 75 | 645763662 | 353009980 | 389178180 | 834720101 | 423217 | ERX377875 | ERS345929 | ERA281389 | SC | Wellcome Sanger Institute | 2 | 0.55361 | 0.77433 | 0.22997 | 0.23614 | 0.9278 | 0.7824 | 0.57593 | 0.60708 | 65 | 75 | B | B | mate1-mate2 similar by mapping diff | illumina | hiseq_era | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2014-01-21 | Hatching | Embryo | Whole Organism | All anatomical structures |