run_metadata: 9411
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 9411 | ERR273833 | ERX248109 | ERS152844 | ERP001559 | PRJEB3118 | Zebrafish transcript profiling | Zebrafish_transcript_profiling-sc-2012-06-28T15:47:32Z-82 | Transcriptome Analysis | Paired end sequence data from the Illumina Genome Analyzer was prepared from normal and mutant zebrafish embryos for transcript profiling. This includes pilot studies for transcript indexing within the sequence reads. | SAMEA1889002 | SC | ArrayExpress DevelopmentalStage:Long pec|ArrayExpress OrganismPart:Whole Embryo|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 05 13T11:13:14Z|ENA LAST UPDATE:2018 03 08T15:49:13Z|External Id:SAMEA1889002|INSDC center name:SC|INSDC first public:2013 05 13T11:13:14Z|INSDC last update:2018 03 08T15:49:13Z|INSDC status:public|Submitter Id:Zebrafish tpp1 wt1 sc 2012 06 28T15:45:40Z 1444025|common name:zebrafish|sample description:3 prime end enriched mRNA from 3 morphological mutant embryo samples and 3 matched sibling wild type samples. A 5 base indexing sequence is bases 6 to 10 of read 1 followed by polyT|sample name:Zebrafish tpp1 wt1 sc 2012 06 28T15:45:40Z 1444025|scientific name:Danio rerio|strain:mixed | 1 | SC EXP 8119 6#2 | 5514798 | Illumina sequencing of library 5514798 constructed from sample accession ERS152844 for study accession ERP001559. This is part of an Illumina multiplexed sequencing run 8119 6. This submission includes reads tagged with the sequence CTACCA. | qPCR only | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | ERP001559 | Illumina HiSeq 2000 paired end sequencing | ENA FIRST PUBLIC:2013 05 13|ENA LAST UPDATE:2018 11 16 | 8119_6#2.bam | bam | 1000855520.0 | 7148968.0 | SC RUN 8119 6#2 | 0:65 1:75 | A:288372410;C:165532355;G:185754344;T:360278074;N:918337 | 65 | 75 | 288372410 | 165532355 | 185754344 | 360278074 | 918337 | ERX248109 | ERS152844 | ERA212579 | SC | Wellcome Sanger Institute | 2 | 0.44708 | 0.73416 | 0.13516 | 0.14834 | 0.89455 | 0.79815 | 0.54327 | 0.55354 | 65 | 75 | B | B | mate1-mate2 similar by mapping diff | illumina | hiseq_era | 3prime | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2013-05-13 | Hatching | Embryo | Whole Organism | All anatomical structures |