run_metadata: 9251
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 9251 | ERR202553 | ERX177238 | ERS128287 | ERP001280 | PRJEB2925 | maternal to Zygotic Transition | maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599 | Transcriptome Analysis | During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development known as the maternal to zygotic transition MZT the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing. | SAMEA1570547 | SC | ArrayExpress DiseaseState:WT|ArrayExpress OrganismPart:Whole embryo|ArrayExpress Phenotype:WT|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2012 11 29T17:01:43Z|ENA LAST UPDATE:2018 03 08T15:46:13Z|External Id:SAMEA1570547|INSDC center name:SC|INSDC first public:2012 11 29T17:01:43Z|INSDC last update:2018 03 08T15:46:13Z|INSDC status:public|Submitter Id:ccT12 sc 2012 04 19T16:32:33Z 1402703|common name:zebrafish|sample description:zebrafish cell cycle experiment|sample name:ccT12 sc 2012 04 19T16:32:33Z 1402703|scientific name:Danio rerio|strain:T/LF | 1 | SC EXP 7991 1#12 | 5151822 | Illumina sequencing of library 5151822 constructed from sample accession ERS128287 for study accession ERP001280. This is part of an Illumina multiplexed sequencing run 7991 1. This submission includes reads tagged with the sequence CTTGTA. | Illumina cDNA protocol | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | ERP001280 | Illumina HiSeq 2000 paired end sequencing | ENA FIRST PUBLIC:2012 11 28|ENA LAST UPDATE:2018 11 16 | 7991_1#12.bam | bam | 2205560100.0 | 14703734.0 | SC RUN 7991 1#12 | 0:75 1:75 | A:592914196;C:514804425;G:503196825;T:594414796;N:229858 | 75 | 75 | 592914196 | 514804425 | 503196825 | 594414796 | 229858 | ERX177238 | ERS128287 | ERA176708 | SC | Wellcome Sanger Institute | 2 | 0.93385 | 0.93649 | 0.03267 | 0.03263 | 0.7839 | 0.7837 | 0.4747 | 0.47597 | 75 | 75 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2012-11-28 | Undetermined | Embryo | Whole Organism | All anatomical structures |