run_metadata: 9198
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 9198 | ERR217291 | ERX191956 | ERS177087 | ERP001280 | PRJEB2925 | maternal to Zygotic Transition | maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599 | Transcriptome Analysis | During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development known as the maternal to zygotic transition MZT the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing. | SAMEA1689748 | SC | ArrayExpress Genotype:Wildtype|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 01 09T08:46:36Z|ENA LAST UPDATE:2018 03 08T15:58:37Z|External Id:SAMEA1689748|INSDC center name:SC|INSDC first public:2013 01 09T08:46:36Z|INSDC last update:2018 03 08T15:58:37Z|INSDC status:public|Submitter Id:oocyteFraction sc 2012 09 25T08:20:48Z 1484035|common name:zebrafish|sample description:RNA from oocytes|sample name:oocyteFraction sc 2012 09 25T08:20:48Z 1484035|scientific name:Danio rerio|strain:T/LF | 1 | SC EXP 8567 1 | 5956007 | Illumina sequencing of library 5956007 constructed from sample accession ERS177087 for study accession ERP001280. | Illumina cDNA protocol | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP001280 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2013 01 08|ENA LAST UPDATE:2018 11 16 | 8567_1.bam | bam | 700846400.0 | 14016928.0 | SC RUN 8567 1 | 0:25 1:25 | A:156856071;C:189943304;G:186494044;T:167363835;N:189146 | 25 | 25 | 156856071 | 189943304 | 186494044 | 167363835 | 189146 | ERX191956 | ERS177087 | ERA182300 | SC | Wellcome Sanger Institute | 2 | 0.92873 | 0.92719 | 0.33189 | 0.33319 | 0.87691 | 0.88361 | 0.67468 | 0.67237 | 25 | 25 | B | B | biological fallback assumption | illumina | miseq | unknown | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2013-01-08 | Zygote | Embryo | Oocyte | Reproductive System |