run_metadata: 9197
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 9197 | ERR247040 | ERX221574 | ERS199652 | ERP001280 | PRJEB2925 | maternal to Zygotic Transition | maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599 | Transcriptome Analysis | During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development known as the maternal to zygotic transition MZT the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing. | SAMEA1710141 | SC | ArrayExpress Genotype:Wildtype|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 03 25T17:04:29Z|ENA LAST UPDATE:2018 03 08T16:11:05Z|External Id:SAMEA1710141|INSDC center name:SC|INSDC first public:2013 03 25T17:04:29Z|INSDC last update:2018 03 08T16:11:05Z|INSDC status:public|Submitter Id:oocyteFraction strand specific sc 2012 12 18T11:01:05Z 1528879|common name:zebrafish|sample description:RNA from oocytes|sample name:oocyteFraction strand specific sc 2012 12 18T11:01:05Z 1528879|scientific name:Danio rerio|strain:T/LF | 1 | SC EXP 9059 1 | 6378827 | Illumina sequencing of library 6378827 constructed from sample accession ERS199652 for study accession ERP001280. | Pre quality controlled | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina MiSeq | ERP001280 | Illumina MiSeq paired end sequencing | ENA FIRST PUBLIC:2013 03 25|ENA LAST UPDATE:2018 11 16 | 9059_1.bam | bam | 5753899800.0 | 19179666.0 | SC RUN 9059 1 | 0:150 1:150 | A:1244815314;C:1614707066;G:1630780426;T:1257755311;N:5841683 | 150 | 150 | 1244815314 | 1614707066 | 1630780426 | 1257755311 | 5841683 | ERX221574 | ERS199652 | ERA203591 | SC | Wellcome Sanger Institute | 2 | 0.92925 | 0.92503 | 0.31746 | 0.31669 | 0.86752 | 0.8714 | 0.76375 | 0.7364 | 150 | 150 | B | B | biological fallback assumption | illumina | miseq | unknown | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2013-03-25 | Zygote | Embryo | Oocyte | Reproductive System |