run_metadata: 9193
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 9193 | ERR223601 | ERX198261 | ERS164631 | ERP001280 | PRJEB2925 | maternal to Zygotic Transition | maternal_to_Zygotic_Transition-sc-2012-03-12T11:38:43Z-599 | Transcriptome Analysis | During early stages of embryonic development the genome is transcriptionally inactive and cells are under the control of maternally provided mRNA and proteins. At a key point in development known as the maternal to zygotic transition MZT the genome becomes activated and the maternally provided mRNAs begin to degrade. We plan to map the mRNA profiles of genes during the maternal to zygotic transition by using solexa sequencing. | SAMEA1689747 | SC | ArrayExpress Genotype:Wildtype|ArrayExpress Species:Danio rerio|ENA FIRST PUBLIC:2013 01 21T17:01:50Z|ENA LAST UPDATE:2018 03 08T15:54:08Z|External Id:SAMEA1689747|INSDC center name:SC|INSDC first public:2013 01 21T17:01:50Z|INSDC last update:2018 03 08T15:54:08Z|INSDC status:public|Submitter Id:oocyte 3 sc 2013 10 01T10:28:48Z 1471964|common name:zebrafish|sample description:RNA from oocytes|sample name:oocyte 3 sc 2013 10 01T10:28:48Z 1471964|scientific name:Danio rerio|strain:T/LF | 1 | SC EXP 8527 4#3 | 5919326 | Illumina sequencing of library 5919326 constructed from sample accession ERS164631 for study accession ERP001280. This is part of an Illumina multiplexed sequencing run 8527 4. This submission includes reads tagged with the sequence TTAGGC. | Illumina cDNA protocol | RNA-Seq | TRANSCRIPTOMIC | cDNA | PAIRED | ILLUMINA | Illumina HiSeq 2000 | ERP001280 | Illumina HiSeq 2000 paired end sequencing | ENA FIRST PUBLIC:2013 01 21|ENA LAST UPDATE:2018 11 16 | 8527_4#3.bam | bam | 5568567900.0 | 37123786.0 | SC RUN 8527 4#3 | 0:75 1:75 | A:1465046903;C:1328645470;G:1303745131;T:1467407999;N:3722397 | 75 | 75 | 1465046903 | 1328645470 | 1303745131 | 1467407999 | 3722397 | ERX198261 | ERS164631 | ERA189990 | SC | Wellcome Sanger Institute | 2 | 0.94501 | 0.94442 | 0.0444 | 0.04437 | 0.75028 | 0.75142 | 0.50196 | 0.5009 | 75 | 75 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | cdna_unspecified | unknown | bulk | unknown | unknown | United Kingdom | 2013-01-21 | Zygote | Embryo | Oocyte | Reproductive System |