run_metadata: 8087
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 8087 | ERR2304198 | ERX2355526 | ERS2201734 | ERP106721 | PRJEB24858 | Zebrafish modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1 | ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099 | Other | RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not. | ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08 | Young wild type biorep1 | SAMEA104590452 | Adelaide Bioinformatics Hub | ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590452|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Young wild type biorep1|common name:zebrafish|sample name:Young wild type biorep1 | NextSeq 500 paired end sequencing | ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 1 | 4 non mutant K97Gfs 6mth 10 03 2016 S1 fem | RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease | Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol. | RNA-Seq | TRANSCRIPTOMIC | PCR | PAIRED | ILLUMINA | NextSeq 500 | ERP106721 | NextSeq 500 paired end sequencing | ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16 | 4_non_mutant_K97Gfs_6mth_10_03_2016_S1_fem_R1.fastq.gz 4_non_mutant_K97Gfs_6mth_10_03_2016_S1_fem_R2.fastq.gz | fastq fastq | 13910901600.0 | 46369672.0 | ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 1 | 0:150 1:150 | A:3994738757;C:2957179645;G:3191379676;T:3764325893;N:3277629 | 150 | 150 | 3994738757 | 2957179645 | 3191379676 | 3764325893 | 3277629 | ERX2355526 | ERS2201734 | ERA1210082 | Adelaide Bioinformatics Hub|European Nucleotide Archive | Adelaide Bioinformatics Hub | 2 | 0.91399 | 0.9166 | 0.3202 | 0.31818 | 0.6942 | 0.698 | 0.46902 | 0.47111 | 150 | 150 | B | B | biological fallback assumption | illumina | nextseq | unknown | random_priming | unknown | bulk | unknown | unknown | Australia | 2018-02-08 | Undetermined | Adult | Brain | Nervous System |