run_metadata: 8084
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 8084 | ERR2304201 | ERX2355529 | ERS2201737 | ERP106721 | PRJEB24858 | Zebrafish modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1 | ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099 | Other | RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not. | ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08 | Young mutant biorep1 | SAMEA104590455 | Adelaide Bioinformatics Hub | ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590455|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Young mutant biorep1|common name:zebrafish|sample name:Young mutant biorep1 | NextSeq 500 paired end sequencing | ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 4 | 10 psen1K97Gfshet 6mth 10 03 2016 S1 fem | RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease | Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol. | RNA-Seq | TRANSCRIPTOMIC | PCR | PAIRED | ILLUMINA | NextSeq 500 | ERP106721 | NextSeq 500 paired end sequencing | ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16 | 10_psen1K97Gfshet_6mth_10_03_2016_S1_fem_R1.fastq.gz 10_psen1K97Gfshet_6mth_10_03_2016_S1_fem_R2.fastq.gz | fastq fastq | 11724649800.0 | 39082166.0 | ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 4 | 0:150 1:150 | A:3304100658;C:2560616667;G:2779636286;T:3077545106;N:2751083 | 150 | 150 | 3304100658 | 2560616667 | 2779636286 | 3077545106 | 2751083 | ERX2355529 | ERS2201737 | ERA1210082 | Adelaide Bioinformatics Hub|European Nucleotide Archive | Adelaide Bioinformatics Hub | 2 | 0.92121 | 0.91893 | 0.28263 | 0.27928 | 0.69073 | 0.6953 | 0.47174 | 0.46157 | 150 | 150 | B | B | biological fallback assumption | illumina | nextseq | unknown | random_priming | unknown | bulk | unknown | unknown | Australia | 2018-02-08 | Undetermined | Adult | Brain | Nervous System |