run_metadata: 8077
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 8077 | ERR2304208 | ERX2355536 | ERS2201744 | ERP106721 | PRJEB24858 | Zebrafish modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1 | ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099 | Other | RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not. | ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08 | Aged mutant biorep2 | SAMEA104590462 | Adelaide Bioinformatics Hub | ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590462|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Aged mutant biorep2|common name:zebrafish|sample name:Aged mutant biorep2 | NextSeq 500 paired end sequencing | ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 11 | 8 psen1K97Gfshet 24mth 13 03 2014 S2 fem | RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease | Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol. | RNA-Seq | TRANSCRIPTOMIC | PCR | PAIRED | ILLUMINA | NextSeq 500 | ERP106721 | NextSeq 500 paired end sequencing | ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16 | 8_psen1K97Gfshet_24mth_13_03_2014_S2_fem_R1.fastq.gz 8_psen1K97Gfshet_24mth_13_03_2014_S2_fem_R2.fastq.gz | fastq fastq | 8559244581.0 | 35608377.0 | ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 11 | 0:119.87 1:120.50 | A:2397336730;C:1892236963;G:1910506310;T:2358778868;N:385710 | 119 | 120 | 2397336730 | 1892236963 | 1910506310 | 2358778868 | 385710 | ERX2355536 | ERS2201744 | ERA1210082 | Adelaide Bioinformatics Hub|European Nucleotide Archive | Adelaide Bioinformatics Hub | 2 | 0.92422 | 0.92311 | 0.30514 | 0.30437 | 0.69578 | 0.7008 | 0.49054 | 0.48857 | 150 | 150 | B | B | biological fallback assumption | illumina | nextseq | unknown | random_priming | unknown | bulk | unknown | unknown | Australia | 2018-02-08 | Undetermined | Adult | Brain | Nervous System |