run_metadata: 8076
This data as json
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 8076 | ERR2304209 | ERX2355537 | ERS2201745 | ERP106721 | PRJEB24858 | Zebrafish modelling familialAlzheimer's disease using heterozygous K97fs mutation in locus psen1 | ena-STUDY-Adelaide Bioinformatics Hub-08-02-2018-04:47:34:743-1099 | Other | RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease Total RNA was extracted from the whole brains of mutant and wild type zebrafish when they were either 6 mpf young adult or 24 mpf infertile adult. Mutant zebrafish possess a heterozygous K97fs mutation at the endogenous zebrafish psen1 locus while wild type zebrafish do not. | ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 02 08 | Aged mutant biorep3 | SAMEA104590463 | Adelaide Bioinformatics Hub | ENA first public:2018 05 11|ENA last update:2018 02 14|External Id:SAMEA104590463|INSDC center alias:Adelaide Bioinformatics Hub|INSDC center name:Adelaide Bioinformatics Hub|INSDC first public:2018 05 11T17:03:03Z|INSDC last update:2018 02 14T06:16:03Z|INSDC status:public|Submitter Id:Aged mutant biorep3|common name:zebrafish|sample name:Aged mutant biorep3 | NextSeq 500 paired end sequencing | ena EXPERIMENT Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 12 | 9 psen1K97Gfshet 24mth 13 03 2014 S3 fem | RNA seq analysis of whole brains from zebrafish possessing a heterozygous K97fs mutation in psen1 to model familial Alzheimer's disease | Total RNA was extracted from whole brains using the mirVana miRNA isolation kit ThermoFisher using the manufacturer's protocol. | RNA-Seq | TRANSCRIPTOMIC | PCR | PAIRED | ILLUMINA | NextSeq 500 | ERP106721 | NextSeq 500 paired end sequencing | ENA FIRST PUBLIC:2018 05 11|ENA LAST UPDATE:2018 11 16 | 9_psen1K97Gfshet_24mth_13_03_2014_S3_fem_R1.fastq.gz 9_psen1K97Gfshet_24mth_13_03_2014_S3_fem_R2.fastq.gz | fastq fastq | 9318039088.0 | 38360343.0 | ena RUN Adelaide Bioinformatics Hub 15 02 2018 04:44:34:534 12 | 0:121.17 1:121.74 | A:2583644589;C:2091813317;G:2105322994;T:2536795040;N:463148 | 121 | 121 | 2583644589 | 2091813317 | 2105322994 | 2536795040 | 463148 | ERX2355537 | ERS2201745 | ERA1210082 | Adelaide Bioinformatics Hub|European Nucleotide Archive | Adelaide Bioinformatics Hub | 2 | 0.93003 | 0.92836 | 0.26254 | 0.26157 | 0.68992 | 0.69593 | 0.48246 | 0.48292 | 134 | 134 | B | B | biological fallback assumption | illumina | nextseq | unknown | random_priming | unknown | bulk | unknown | unknown | Australia | 2018-02-08 | Undetermined | Adult | Brain | Nervous System |