run_metadata: 7944
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 7944 | ERR3446732 | ERX3468731 | ERS1806663 | ERP023267 | PRJEB21045 | RNASeq of zebrafish metabolic mutants | RNASeq_of_zebrafish_metabolic_mutants-sc-4765 | Transcriptome Analysis | RNAseq data was generated from one or more alleles of zebrafish metabolic mutants for transcriptome analysis. | ENA FIRST PUBLIC:2019 07 22|ENA LAST UPDATE:2017 05 25|ArrayExpress:E ERAD 683 | zmp ph279 B3 | SAMEA104147645 | Wellcome Sanger Institute | ArrayExpress DEVELOPMENTAL STAGE:Larval:Protruding mouth ZFS:0000035|ArrayExpress ORGANISM PART:Whole organism|ArrayExpress SPECIES:Danio rerio|ArrayExpress STRAIN OR LINE:mixed|ENA first public:2019 06 29|ENA last update:2017 06 29|External Id:SAMEA104147645|INSDC center alias:SC|INSDC center name:Wellcome Sanger Institute|INSDC first public:2019 06 29T04:02:25Z|INSDC last update:2017 06 29T14:54:26Z|INSDC status:public|Submitter Id:37fdbd40 41ed 11e7 b6fe 3c4a9275d6c8|common name:zebrafish|sample name:37fdbd40 41ed 11e7 b6fe 3c4a9275d6c8|subject id:4765STDY6934947 | Illumina HiSeq 2500 paired end sequencing | SC EXP 22829 8#2 | DN488439N:B1 | Illumina sequencing of library DN488439N:B1 constructed from sample accession ERS1806663 for study accession ERP023267. This is part of an Illumina multiplexed sequencing run 22829 8. This submission includes reads tagged with the sequence CGATGTTT. | RNA seq dUTP eukaryotic | RNA-Seq | TRANSCRIPTOMIC | PolyA | PAIRED | ILLUMINA | Illumina HiSeq 2500 | ERP023267 | Illumina HiSeq 2500 paired end sequencing | ENA FIRST PUBLIC:2019 07 22|ENA LAST UPDATE:2019 07 22 | 22829_8#2.cram | cram | 883215600.0 | 5888104.0 | SC RUN 22829 8#2 | 0:75 1:75 | A:231296783;C:208055844;G:208135446;T:234080007;N:1647520 | 75 | 75 | 231296783 | 208055844 | 208135446 | 234080007 | 1647520 | ERX3468731 | ERS1806663 | ERA2044656 | European Nucleotide Archive | Wellcome Sanger Institute | 2 | 0.95417 | 0.95779 | 0.14224 | 0.14158 | 0.67945 | 0.68178 | 0.49376 | 0.49496 | 75 | 75 | B | B | biological fallback assumption | illumina | hiseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | United Kingdom | 2017-05-25 | Larval | Larval | Whole Organism | All anatomical structures |