run_metadata: 77263
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 77263 | SRR25434205 | SRX21168296 | SRS18429830 | SRP451673 | PRJNA999043 | The transcription analysis of gonad in zebrafish | PRJNA999043 | Other | To screen out the female biased genes | cyp17a1 / ;dmrt1 / 2 | isolate:not applicable|age:80days|dev stage:Adult|collection date:2021|geo loc name:China:Wuhan|sex:female|tissue:Gonad|replicate:replicate = biological replicate 4|BioSampleModel:Model organism or animal | RNA seq of gonad | dko2 | dko2 | screen out the key genes | RNA-Seq | TRANSCRIPTOMIC | PolyA | PAIRED | ILLUMINA | Illumina NovaSeq 6000 | SRP451673 | dko2_R2.fastq.gz dko2_R1.fastq.gz | fastq fastq | 6765257700.0 | 22550859.0 | dko2 R1.fastq.gz | 0:150 1:150 | A:1746873541;C:1617601783;G:1668365344;T:1732367309;N:49723 | 150 | 150 | 1746873541 | 1617601783 | 1668365344 | 1732367309 | 49723 | SRX21168296 | SRS18429830 | SRA1681175 | Chinese Academy of Sciences|Institute of Hydrology | Chinese Academy of Sciences | 2 | 0.90858 | 0.90858 | 0.02015 | 0.01977 | 0.7612 | 0.76213 | 0.46791 | 0.47242 | 150 | 150 | B | B | biological fallback assumption | illumina | novaseq_era | unknown | poly_a | unknown | bulk | unknown | unknown | China | 2023-07-27 | Multi-stage | Multi-stage | Gonad | Reproductive System |