run_metadata: 76737
This data as json
| rowid | run.accession | experiment.accession | sample.accession | study.accession | bioproject | study.title | study.alias | study.type | study.abstract | study.attributes | study.PMIDs | sample.description | sample.title | sample.alias | sample.centername | sample.attributes | GEOsample.title | GEOsample.dataprocessing | GEOsample.source | GEOsample.treatmentprotocol | GEOsample.extractprotocol | GEOsample.growthprotocol | GEOsample.characteristics | GEOsample.accession | experiment.title | experiment.alias | experiment.library_name | experiment.design_description | experiment.library_construction_protocol | experiment.attributes | experiment.library_strategy | experiment.library_source | experiment.library_selection | experiment.library_layout | experiment.platform | experiment.instrument_model | experiment.spot_descriptor | experiment.study_ref | run.title | run.attributes | run.filename | run.semantic_name | run.total_bases | run.total_spots | run.alias | run.read_lengths | run.base_counts | run.r1_length | run.r2_length | run.r3_length | run.r4_length | run.Acount | run.Ccount | run.Gcount | run.Tcount | run.Ncount | run.experiment | run.pool_member | submission.accession | submission.srasource | submission.bioprojectsource | seqdetective.n_mates | seqdetective.mapping_rate.mate1 | seqdetective.mapping_rate.mate2 | seqdetective.nofeature_rate.mate1 | seqdetective.nofeature_rate.mate2 | seqdetective.sparsity.mate1 | seqdetective.sparsity.mate2 | seqdetective.pos_strand_rate.mate1 | seqdetective.pos_strand_rate.mate2 | seqdetective.readlen.mate1 | seqdetective.readlen.mate2 | seqdetective.judgement.mate1 | seqdetective.judgement.mate2 | seqdetective.judgement.reason | platform_family | instrument_generation | read_bias | selection_class | prep_kit | sc_or_bulk | tech_class | technology | tech_variant | submission.bioprojectsource.country | earliest_date | devstage_curation | devstage_curation_coarse | tissue_curation | tissue_curation_coarse |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 76737 | SRR25361309 | SRX21100650 | SRS18369832 | SRP450509 | PRJNA996758 | Transcriptome analysis of Zebrafish testis | PRJNA996758 | Other | In summary this study obtained whole transcriptome data of mature testis of triploid zebrafish by RNA seq which provided a data platform for the study of reproductive development of triploid fish. Screening and identification of miRNAs related to spermatogenesis in zebrafish. | Zebrafish 2N 3 | strain:not collected|age:3 mpf|collection date:not collected|geo loc name:not applicable|sex:male|tissue:testis|replicate:biological replicate 3|BioSampleModel:Model organism or animal | miRNA Seq of diploid zebrafish: mature testis 3 | S03 | S03 | small RNA Sample Pre Kit | miRNA-Seq | TRANSCRIPTOMIC | PCR | SINGLE | ILLUMINA | HiSeq X Ten | SRP450509 | Zebrafish-2N-3.fq | fastq | 534146242.0 | 21237464.0 | Zebrafish 2N 3.fq | 0:25.15 | A:134813196;C:109988603;G:122363487;T:166967106;N:13850 | 25 | 134813196 | 109988603 | 122363487 | 166967106 | 13850 | SRX21100650 | SRS18369832 | SRA1676237 | Hunan Normal University|College of Life Sciences | Hunan Normal University | 1 | 0.78557 | 0.41489 | 0.84682 | 0.52155 | 26 | B | usable mapping rate | illumina | hiseq_era | full_length | random_priming | unknown | bulk | unknown | unknown | China | 2023-07-20 | Adult | Adult | Gonad | Reproductive System |